View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8228_low_29 (Length: 285)
Name: NF8228_low_29
Description: NF8228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8228_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 12613528 - 12613795
Alignment:
| Q |
1 |
atcctaaaacgattcaacctttggaatgctaagaaaacatccacaagagaattggagtgacccaaaagtaggacatttctcgaattataacacatatggg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
12613528 |
atcctaaaacgattcaacctttggaatgctaagaaaacatccacaagagaattggagtgacccaaaagtaggacatttctcgaattataacacaaatggg |
12613627 |
T |
|
| Q |
101 |
ttcagcccctaccagctcatgggttcttaaagtacttcacattttcaggcttgatgattggggcgttcttgaatagactaggggatcgacccatatccta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12613628 |
ttcagcccctaccagctcatgggttcttaaagtacttcacattttcaggcttgatgattggggcgttcttgaatagactaggggatcgacccatatccta |
12613727 |
T |
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| Q |
201 |
gctactcttaaaggataaaaggctactcaaatgtctttaaaattaaaagcgaacaaaacaatcaaaat |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
12613728 |
gctactcttaaaggataaaaggctactcaaatgtctttaaaattaaaagcgaacaaaacattcaaaat |
12613795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 16715132 - 16715389
Alignment:
| Q |
1 |
atcctaaaacgattcaacctttggaatgctaagaaaacatccacaagagaattggagtgacccaaaagtaggacatttctcgaattataacacatatggg |
100 |
Q |
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|||||||||| ||||||| |||||||||||| ||||||||| ||||||||| || ||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
16715132 |
atcctaaaacaattcaacttttggaatgctacgaaaacatctacaagagaagtgaagtgacctaaaagtaggacatttctcgaatcataacacatatggg |
16715231 |
T |
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| Q |
101 |
ttcagcccctaccagctcatgggttcttaaagtacttcacattttcaggcttgatgattggggcgttcttgaatagactaggggatcgacccatatccta |
200 |
Q |
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|| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| ||||||||||||||||| |
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| T |
16715232 |
ctcggtccctaccagctcatgggttcttaaagtacttcacattttcaggcttgatgcttggggcgttcttaaatagattagtggatcgacccatatcctt |
16715331 |
T |
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| Q |
201 |
gctactcttaaaggataaaaggctactcaaatgtctttaaaattaaaagcgaacaaaa |
258 |
Q |
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| ||||||||| |||||||||||||| |||| ||| ||||||||||| |||||||| |
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| T |
16715332 |
gttactcttaagggataaaaggctacaaaaatatctataaaattaaaatagaacaaaa |
16715389 |
T |
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