View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8228_low_3 (Length: 549)

Name: NF8228_low_3
Description: NF8228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8228_low_3
NF8228_low_3
[»] chr4 (19 HSPs)
chr4 (18-353)||(43180606-43180941)
chr4 (469-532)||(43180479-43180542)
chr4 (354-400)||(21498536-21498582)
chr4 (354-400)||(54210382-54210428)
chr4 (354-400)||(12016736-12016782)
chr4 (354-400)||(12016944-12016990)
chr4 (354-399)||(39110913-39110958)
chr4 (354-398)||(27634379-27634423)
chr4 (354-400)||(25753658-25753704)
chr4 (354-400)||(43943678-43943724)
chr4 (354-400)||(53559358-53559404)
chr4 (354-392)||(4645865-4645903)
chr4 (354-400)||(5488372-5488418)
chr4 (354-400)||(28497267-28497313)
chr4 (354-400)||(49380933-49380979)
chr4 (354-400)||(50307281-50307327)
chr4 (354-399)||(5066065-5066110)
chr4 (354-399)||(40716689-40716734)
chr4 (356-400)||(8560026-8560070)
[»] chr3 (36 HSPs)
chr3 (218-353)||(34311702-34311837)
chr3 (354-400)||(22407701-22407747)
chr3 (354-400)||(9264346-9264392)
chr3 (354-398)||(22407494-22407538)
chr3 (353-400)||(26366736-26366783)
chr3 (354-400)||(4191175-4191221)
chr3 (354-400)||(9264139-9264185)
chr3 (354-400)||(9264553-9264599)
chr3 (354-400)||(22339746-22339792)
chr3 (354-400)||(37058824-37058870)
chr3 (354-400)||(50692328-50692374)
chr3 (354-400)||(54591518-54591564)
chr3 (355-399)||(21832745-21832789)
chr3 (354-398)||(51642688-51642732)
chr3 (354-400)||(5440582-5440628)
chr3 (353-399)||(10758820-10758866)
chr3 (354-400)||(33798852-33798898)
chr3 (354-400)||(39078824-39078870)
chr3 (354-400)||(42258915-42258961)
chr3 (354-400)||(49477539-49477585)
chr3 (354-400)||(50692531-50692577)
chr3 (354-400)||(51338494-51338540)
chr3 (354-400)||(53640225-53640271)
chr3 (354-400)||(54495536-54495582)
chr3 (354-399)||(4029697-4029742)
chr3 (354-399)||(39956727-39956772)
chr3 (354-400)||(21833529-21833575)
chr3 (354-400)||(25627974-25628020)
chr3 (354-400)||(34992582-34992628)
chr3 (354-400)||(34992874-34992920)
chr3 (357-399)||(47702480-47702522)
chr3 (354-400)||(51642481-51642527)
chr3 (354-400)||(53640018-53640064)
chr3 (359-400)||(1353412-1353453)
chr3 (354-398)||(21832252-21832296)
chr3 (354-398)||(37223582-37223626)
[»] chr2 (24 HSPs)
chr2 (354-400)||(16006982-16007028)
chr2 (354-400)||(19859930-19859976)
chr2 (354-400)||(19860042-19860088)
chr2 (354-400)||(20999042-20999088)
chr2 (354-400)||(883654-883700)
chr2 (354-400)||(883855-883901)
chr2 (354-400)||(884062-884108)
chr2 (354-400)||(6986469-6986515)
chr2 (354-400)||(10570940-10570986)
chr2 (354-400)||(12419843-12419889)
chr2 (354-400)||(12431903-12431949)
chr2 (354-400)||(17727409-17727455)
chr2 (354-400)||(25621338-25621384)
chr2 (354-400)||(29684016-29684062)
chr2 (358-400)||(33985826-33985868)
chr2 (354-400)||(33986028-33986074)
chr2 (354-400)||(34775362-34775408)
chr2 (354-399)||(18607306-18607351)
chr2 (354-395)||(21734426-21734467)
chr2 (354-399)||(29101756-29101801)
chr2 (356-399)||(3435541-3435584)
chr2 (354-400)||(12432110-12432156)
chr2 (354-396)||(27545169-27545211)
chr2 (354-400)||(29695392-29695438)
[»] scaffold0989 (1 HSPs)
scaffold0989 (354-400)||(3000-3046)
[»] scaffold0054 (1 HSPs)
scaffold0054 (354-400)||(21316-21362)
[»] chr8 (17 HSPs)
chr8 (354-400)||(8559586-8559632)
chr8 (354-400)||(10989294-10989340)
chr8 (354-400)||(15011082-15011128)
chr8 (354-400)||(20760713-20760759)
chr8 (356-400)||(8559733-8559777)
chr8 (354-398)||(42228778-42228822)
chr8 (354-400)||(5720920-5720966)
chr8 (354-400)||(15010874-15010920)
chr8 (354-400)||(40902446-40902492)
chr8 (354-400)||(45122316-45122362)
chr8 (354-399)||(43599317-43599362)
chr8 (361-400)||(4196010-4196049)
chr8 (354-400)||(8559852-8559897)
chr8 (354-400)||(10989087-10989133)
chr8 (354-400)||(16454688-16454734)
chr8 (354-400)||(35561671-35561717)
chr8 (356-400)||(33435888-33435932)
[»] chr7 (13 HSPs)
chr7 (354-400)||(39808650-39808696)
chr7 (354-400)||(23396614-23396660)
chr7 (364-400)||(6214298-6214334)
chr7 (353-400)||(16565103-16565150)
chr7 (353-400)||(16600512-16600559)
chr7 (354-400)||(6782831-6782877)
chr7 (354-400)||(6783043-6783089)
chr7 (354-400)||(9378798-9378844)
chr7 (354-400)||(9379005-9379051)
chr7 (354-400)||(29252581-29252627)
chr7 (354-400)||(48114002-48114048)
chr7 (356-400)||(35866694-35866738)
chr7 (354-390)||(39808517-39808553)
[»] chr6 (9 HSPs)
chr6 (354-400)||(6623478-6623524)
chr6 (354-400)||(15101164-15101210)
chr6 (354-400)||(16877063-16877109)
chr6 (354-400)||(11313435-11313481)
chr6 (354-400)||(24558588-24558634)
chr6 (354-400)||(16590189-16590235)
chr6 (354-400)||(16605145-16605191)
chr6 (354-400)||(16876883-16876929)
chr6 (354-398)||(5269326-5269370)
[»] chr5 (24 HSPs)
chr5 (354-400)||(48157-48203)
chr5 (354-400)||(11632436-11632482)
chr5 (354-400)||(28358088-28358134)
chr5 (354-400)||(34457308-34457354)
chr5 (354-400)||(43490516-43490562)
chr5 (354-400)||(2908615-2908661)
chr5 (354-400)||(24125067-24125113)
chr5 (354-400)||(34457101-34457147)
chr5 (354-400)||(35527041-35527087)
chr5 (354-400)||(38376736-38376782)
chr5 (354-400)||(40169094-40169140)
chr5 (354-400)||(43490309-43490355)
chr5 (354-399)||(37656785-37656830)
chr5 (354-399)||(37781897-37781942)
chr5 (357-400)||(15286858-15286901)
chr5 (354-397)||(15510557-15510600)
chr5 (361-400)||(35527201-35527240)
chr5 (353-400)||(39268023-39268070)
chr5 (354-396)||(3762915-3762957)
chr5 (354-400)||(18914214-18914260)
chr5 (354-400)||(18914421-18914467)
chr5 (354-400)||(30592433-30592479)
chr5 (372-400)||(28156041-28156069)
chr5 (352-400)||(39268231-39268279)
[»] chr1 (21 HSPs)
chr1 (354-400)||(12314583-12314629)
chr1 (354-400)||(15392030-15392076)
chr1 (354-400)||(29273278-29273324)
chr1 (354-400)||(43361605-43361651)
chr1 (354-400)||(43361810-43361856)
chr1 (354-400)||(52846902-52846948)
chr1 (354-397)||(11590428-11590471)
chr1 (358-400)||(9380905-9380947)
chr1 (354-400)||(15391753-15391799)
chr1 (354-400)||(29265923-29265969)
chr1 (354-400)||(39649137-39649183)
chr1 (354-400)||(48558374-48558420)
chr1 (354-395)||(2997314-2997355)
chr1 (358-395)||(9381109-9381146)
chr1 (354-398)||(2997109-2997153)
chr1 (354-393)||(9381315-9381354)
chr1 (354-393)||(15391831-15391870)
chr1 (354-400)||(33342331-33342377)
chr1 (354-399)||(13959408-13959453)
chr1 (363-400)||(24382213-24382250)
chr1 (363-400)||(39648840-39648877)
[»] scaffold0434 (2 HSPs)
scaffold0434 (354-396)||(13315-13357)
scaffold0434 (354-400)||(13518-13564)
[»] scaffold0029 (1 HSPs)
scaffold0029 (354-400)||(76857-76903)


Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 43180941 - 43180606
Alignment:
Q  18 catcaagcaaaatggcataacaacagaaaccaattatccttatgctgcaaaagatggaacctgtaatatacaaaaggtgcacacactagtctatttataa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43180941 catcaagcaaaatggcataacaacagaaaccaattatccttatgctgcaaaagatggaacctgtaatatacaaaaggtgcacacactagtctatttataa 43180842  T
Q  118 ttagtacctaatatataattaataaattttaatttgattgacttatgagaaaatttaaagatccaaattaacacattttcactttatgtaggagaataaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43180841 ttagtacctaatatataattaataaattttaatttgattgacttatgagaaaatttaaagatccaaattaacacattttcacttgatgtaggagaataaa 43180742  T
Q  218 ccagcagtgtcaattgatggccatgagaatgtccctgctaacaacgaaaaagcattgttgaaagctgctgccaaccaacctatttctgtagctattgatg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43180741 ccagcagtgtcaattgatggccatgagaatgtccctgctaacaatgaaaaagcattgttgaaagctgctgccaaccaacctatttctgtagctattgatg 43180642  T
Q  318 ctgggggatctgatttccagttttattcagaggtaa 353  Q
    ||||||||||||||||||||||||||||||||||||    
T  43180641 ctgggggatctgatttccagttttattcagaggtaa 43180606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 469 - 532
Target Start/End: Complemental strand, 43180542 - 43180479
Alignment:
Q  469 cacctagatcccacttttaattacaaaaatataattacagggagtatttactggacactgtggt 532  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43180542 cacctagatcccacttttaattacaaaaatataattacagggagtatttactggacactgtggt 43180479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 21498582 - 21498536
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  21498582 tttatatactcttctcaagagtcttgtctatccgatgtgggacttgg 21498536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 54210428 - 54210382
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  54210428 tttatatactcttctcaagagtcttgtctatccgatgtgggacttgg 54210382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 12016736 - 12016782
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  12016736 tttataaactcttctcaagagtcttgtctatccgatgtgggacttgg 12016782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 12016944 - 12016990
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  12016944 tttataaactcttctcaagagtcttgtctatccgatgtgggacttgg 12016990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 399
Target Start/End: Complemental strand, 39110958 - 39110913
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttg 399  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||    
T  39110958 tttatatactcttctcaagagtcttatctatccgatgtgggacttg 39110913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 27634379 - 27634423
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggactt 398  Q
    |||||||||||||||| |||||||| |||||||||||||||||||    
T  27634379 tttatatactcttctcaagagtcttatctatccgatgtgggactt 27634423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 25753658 - 25753704
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| |||||| || ||||||||||||||||||||||||||||||    
T  25753658 tttataaactcttatcaagagtcttgtctatccgatgtgggacttgg 25753704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 43943724 - 43943678
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| |||||||| |||||||||||||||||||||    
T  43943724 tttataaactcttctcaagagtcttatctatccgatgtgggacttgg 43943678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 53559358 - 53559404
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||| ||||| || |||||||||||||||||||||    
T  53559358 tttatatactcttctcaagagttttatctatccgatgtgggacttgg 53559404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 392
Target Start/End: Complemental strand, 4645903 - 4645865
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtg 392  Q
    |||||||||||||||| |||||||| |||||||||||||    
T  4645903 tttatatactcttctcaagagtcttatctatccgatgtg 4645865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 5488418 - 5488372
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| |||||||| | |||||||||||||||||||    
T  5488418 tttataaactcttctcaagagtcttatttatccgatgtgggacttgg 5488372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 28497267 - 28497313
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| |||||| || |||||||| |||||||||||||||||||||    
T  28497267 tttataaactcttatcaagagtcttatctatccgatgtgggacttgg 28497313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 49380933 - 49380979
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| |||||||| ||||||||||||| |||||||    
T  49380933 tttataaactcttctcaagagtcttatctatccgatgtgagacttgg 49380979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 50307327 - 50307281
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| |||||| || |||||||| |||||||||||||||||||||    
T  50307327 tttataaactcttgtcaagagtcttatctatccgatgtgggacttgg 50307281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 399
Target Start/End: Complemental strand, 5066110 - 5066065
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttg 399  Q
    |||||||||||||||| |||||||| | |||| |||||||||||||    
T  5066110 tttatatactcttctcaagagtcttatttatctgatgtgggacttg 5066065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 399
Target Start/End: Original strand, 40716689 - 40716734
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttg 399  Q
    |||||||||| ||||| |||||||| ||||| ||||||||||||||    
T  40716689 tttatatactattctcaagagtcttatctatacgatgtgggacttg 40716734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 356 - 400
Target Start/End: Original strand, 8560026 - 8560070
Alignment:
Q  356 tatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||| |||||| || |||||||| |||||||||||||||||||||    
T  8560026 tataaactcttatcaagagtcttatctatccgatgtgggacttgg 8560070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 218 - 353
Target Start/End: Complemental strand, 34311837 - 34311702
Alignment:
Q  218 ccagcagtgtcaattgatggccatgagaatgtccctgctaacaacgaaaaagcattgttgaaagctgctgccaaccaacctatttctgtagctattgatg 317  Q
    ||||||||||| |||||||| ||||||| ||| || |||||  | ||| | || ||| | ||||||| ||||||||||||| | || ||||| || ||||    
T  34311837 ccagcagtgtcgattgatggtcatgagactgttccggctaatgatgaagatgctttgctcaaagctgttgccaaccaacctgtatccgtagccatagatg 34311738  T
Q  318 ctgggggatctgatttccagttttattcagaggtaa 353  Q
    | || |||||||||||||||||||| ||||||||||    
T  34311737 ccggaggatctgatttccagttttactcagaggtaa 34311702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 22407701 - 22407747
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  22407701 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 22407747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 9264346 - 9264392
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  9264346 tttatatactcttctcaagagtcttgtctatccgatgtgggacttgg 9264392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 22407494 - 22407538
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggactt 398  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  22407494 tttatatactcttctcgagagttttgtctatccgatgtgggactt 22407538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 400
Target Start/End: Complemental strand, 26366783 - 26366736
Alignment:
Q  353 atttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  26366783 atttataaactcttctcaagagtcttgtctatccgatgtgggacttgg 26366736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 4191175 - 4191221
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  4191175 tttataaactcttctcaagagtcttgtctatccgatgtgggacttgg 4191221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 9264139 - 9264185
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||    
T  9264139 tttatatactcttctcaagagtcttatctatccgatgtgggacttgg 9264185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 9264553 - 9264599
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||    
T  9264553 tttatatactcttctcaagagtcttatctatccgatgtgggacttgg 9264599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 22339792 - 22339746
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  22339792 tttataaactcttctcaagagtcttgtctatccgatgtgggacttgg 22339746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 37058824 - 37058870
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||    
T  37058824 tttatatactcttctcaagagtcttgtctatctgatgtgggacttgg 37058870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 50692374 - 50692328
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  50692374 tttataaactcttctcaagagtcttgtctatccgatgtgggacttgg 50692328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 54591518 - 54591564
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  54591518 tttataaactcttctcaagagtcttgtctatccgatgtgggacttgg 54591564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 399
Target Start/End: Original strand, 21832745 - 21832789
Alignment:
Q  355 ttatatactcttctcgagagtcttgtctatccgatgtgggacttg 399  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||    
T  21832745 ttataaactcttctcaagagtcttgtctatccgatgtgggacttg 21832789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 51642688 - 51642732
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggactt 398  Q
    |||||||||||||||| |||||||| |||||||||||||||||||    
T  51642688 tttatatactcttctcaagagtcttatctatccgatgtgggactt 51642732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 5440628 - 5440582
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||||||||||||||||||||||| ||||||    
T  5440628 tttataaactcttctcaagagtcttgtctatccgatgtggaacttgg 5440582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 399
Target Start/End: Original strand, 10758820 - 10758866
Alignment:
Q  353 atttatatactcttctcgagagtcttgtctatccgatgtgggacttg 399  Q
    ||||||||| ||||||| |||||||| ||||||||||||||||||||    
T  10758820 atttatataatcttctcaagagtcttatctatccgatgtgggacttg 10758866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 33798852 - 33798898
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||  ||||||||||||||||||||||||| ||||    
T  33798852 tttatatactcttcttaagagtcttgtctatccgatgtgggatttgg 33798898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 39078824 - 39078870
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||||||    
T  39078824 tttataaactcttctcaagagtcttgtctatccgatatgggacttgg 39078870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 42258961 - 42258915
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||| ||| |||| |||||||||||||||||||||    
T  42258961 tttatatactcttctcaagaatcttatctatccgatgtgggacttgg 42258915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 49477585 - 49477539
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| |||||||| |||||||||||||||||||||    
T  49477585 tttataaactcttctcaagagtcttatctatccgatgtgggacttgg 49477539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 50692577 - 50692531
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| |||||| || ||||||||||||||||||||||||||||||    
T  50692577 tttataaactcttatcaagagtcttgtctatccgatgtgggacttgg 50692531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 51338494 - 51338540
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||| |||||||| |||||| ||||||||||||||    
T  51338494 tttatatactcttctcaagagtcttatctatctgatgtgggacttgg 51338540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 53640225 - 53640271
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||| |||||||| |||||| ||||||||||||||    
T  53640225 tttatatactcttctcaagagtcttatctatctgatgtgggacttgg 53640271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 54495582 - 54495536
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| |||||||| |||||||||||||||||||||    
T  54495582 tttataaactcttctcaagagtcttatctatccgatgtgggacttgg 54495536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 354 - 399
Target Start/End: Original strand, 4029697 - 4029742
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttg 399  Q
    |||||| ||||||||| |||||||| ||||||||||||||||||||    
T  4029697 tttataaactcttctcaagagtcttatctatccgatgtgggacttg 4029742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 354 - 399
Target Start/End: Original strand, 39956727 - 39956772
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttg 399  Q
    |||||| ||||||||| ||||||||||||||| |||||||||||||    
T  39956727 tttataaactcttctcaagagtcttgtctatctgatgtgggacttg 39956772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 21833575 - 21833529
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| |||||||||| ||||| |||||||||||||    
T  21833575 tttataaactcttctccagagtcttgtttatccaatgtgggacttgg 21833529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 25627974 - 25628020
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||  ||| |||| |||||||||||||||||||||    
T  25627974 tttatatactcttctgaagaatcttatctatccgatgtgggacttgg 25628020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 34992628 - 34992582
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| |||||||| |||||| ||||||||||||||    
T  34992628 tttataaactcttctcaagagtcttatctatctgatgtgggacttgg 34992582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 34992920 - 34992874
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| |||||||| |||||| ||||||||||||||    
T  34992920 tttataaactcttctcaagagtcttatctatctgatgtgggacttgg 34992874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 399
Target Start/End: Original strand, 47702480 - 47702522
Alignment:
Q  357 atatactcttctcgagagtcttgtctatccgatgtgggacttg 399  Q
    ||||||||||||| |||||||  ||||||||||||||||||||    
T  47702480 atatactcttctcaagagtctcatctatccgatgtgggacttg 47702522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 51642481 - 51642527
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||| |||||||| ||||||| | |||||||||||    
T  51642481 tttatatactcttctcaagagtcttatctatccaacgtgggacttgg 51642527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 53640018 - 53640064
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    ||||||||||||| || |||||||| |||||||||| ||||||||||    
T  53640018 tttatatactcttgtcaagagtcttatctatccgatatgggacttgg 53640064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 400
Target Start/End: Complemental strand, 1353453 - 1353412
Alignment:
Q  359 atactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    ||||||||||| ||| |||||||||| |||||||||||||||    
T  1353453 atactcttctcaagaatcttgtctatgcgatgtgggacttgg 1353412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 21832252 - 21832296
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggactt 398  Q
    |||||| ||| ||||| |||||||||||||||||||||| |||||    
T  21832252 tttataaacttttctcaagagtcttgtctatccgatgtgagactt 21832296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 37223626 - 37223582
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggactt 398  Q
    |||||| |||||||||  ||||||| |||||||||||||||||||    
T  37223626 tttataaactcttctcaggagtcttatctatccgatgtgggactt 37223582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 16007028 - 16006982
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  16007028 tttatatactcttctcaagagtcttgtctatccgatgtgggacttgg 16006982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 19859976 - 19859930
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  19859976 tttataaactcttctcaagagtcttgtctatccgatgtgggacttgg 19859930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 19860088 - 19860042
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  19860088 tttataaactcttctcaagagtcttgtctatccgatgtgggacttgg 19860042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 20999042 - 20999088
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  20999042 tttataaactcttctcaagagtcttgtctatccgatgtgggacttgg 20999088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 883654 - 883700
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| |||||||| |||||||||||||||||||||    
T  883654 tttataaactcttctcaagagtcttatctatccgatgtgggacttgg 883700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 883901 - 883855
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||||||    
T  883901 tttataaactcttctcaagagtcttgtctatccgatatgggacttgg 883855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 884108 - 884062
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||| |||||||  |||||||||||||||||||||    
T  884108 tttatatactcttctcaagagtctcatctatccgatgtgggacttgg 884062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 6986469 - 6986515
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| |||||||| |||||||||||||||||||||    
T  6986469 tttataaactcttctcaagagtcttatctatccgatgtgggacttgg 6986515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 10570986 - 10570940
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||| |||||||| |||||| ||||||||||||||    
T  10570986 tttatatactcttctcaagagtcttatctatctgatgtgggacttgg 10570940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 12419889 - 12419843
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| |||||||| |||||||||||||||||||||    
T  12419889 tttataaactcttctcaagagtcttatctatccgatgtgggacttgg 12419843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 12431949 - 12431903
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| |||||||| |||||||||||||||||||||    
T  12431949 tttataaactcttctcaagagtcttatctatccgatgtgggacttgg 12431903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 17727455 - 17727409
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| |||||||| |||||||||||||||||||||    
T  17727455 tttataaactcttctcaagagtcttatctatccgatgtgggacttgg 17727409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 25621338 - 25621384
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||| |||||||| ||||||||||||| |||||||    
T  25621338 tttatatactcttctcaagagtcttatctatccgatgtgagacttgg 25621384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 29684062 - 29684016
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||| ||||||||||||||| |||| |||||||||    
T  29684062 tttatatactcttctcaagagtcttgtctatctgatgcgggacttgg 29684016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 400
Target Start/End: Original strand, 33985826 - 33985868
Alignment:
Q  358 tatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||| |||||||| |||||||||||||||||||||    
T  33985826 tatactcttctcaagagtcttatctatccgatgtgggacttgg 33985868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 33986028 - 33986074
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||| |||||||| |||||||||||||||| ||||    
T  33986028 tttatatactcttctcaagagtcttatctatccgatgtgggagttgg 33986074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 34775408 - 34775362
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| | ||||||| ||||||||||||||||||||||||||||||    
T  34775408 tttataaattcttctcaagagtcttgtctatccgatgtgggacttgg 34775362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 354 - 399
Target Start/End: Original strand, 18607306 - 18607351
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttg 399  Q
    |||||||||||||||  |||||||||||||||||||||| ||||||    
T  18607306 tttatatactcttcttaagagtcttgtctatccgatgtgagacttg 18607351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 354 - 395
Target Start/End: Complemental strand, 21734467 - 21734426
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtggga 395  Q
    |||||||||||||||| |||||||| ||||||||||||||||    
T  21734467 tttatatactcttctcaagagtcttatctatccgatgtggga 21734426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 354 - 399
Target Start/End: Complemental strand, 29101801 - 29101756
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttg 399  Q
    |||||| ||||||||| || ||||||||||||||||||||||||||    
T  29101801 tttataaactcttctcaagtgtcttgtctatccgatgtgggacttg 29101756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 399
Target Start/End: Original strand, 3435541 - 3435584
Alignment:
Q  356 tatatactcttctcgagagtcttgtctatccgatgtgggacttg 399  Q
    |||| ||||||||| |||||||| ||||||||||||||||||||    
T  3435541 tataaactcttctcaagagtcttatctatccgatgtgggacttg 3435584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 12432156 - 12432110
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||| |||| |||||||||||||||||||||    
T  12432156 tttataaactcttctcaagattcttatctatccgatgtgggacttgg 12432110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 396
Target Start/End: Original strand, 27545169 - 27545211
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggac 396  Q
    |||||| ||||||||| |||||||| |||||||||||||||||    
T  27545169 tttataaactcttctcaagagtcttatctatccgatgtgggac 27545211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 29695392 - 29695438
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| |||||||| ||||||||||||| |||||||    
T  29695392 tttataaactcttctcaagagtcttatctatccgatgtgagacttgg 29695438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0989 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 3000 - 3046
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  3000 tttataaactcttctcaagagtcttgtctatccgatgtgggacttgg 3046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 21316 - 21362
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  21316 tttataaactcttctcaagagtcttgtctatccgatgtgggacttgg 21362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 8559632 - 8559586
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||    
T  8559632 tttatatactcttctcaagagtcttatctatccgatgtgggacttgg 8559586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 10989294 - 10989340
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  10989294 tttataaactcttctcaagagtcttgtctatccgatgtgggacttgg 10989340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 15011082 - 15011128
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  15011082 tttataaactcttctcaagagtcttgtctatccgatgtgggacttgg 15011128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 20760713 - 20760759
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  20760713 tttataaactcttctcaagagtcttgtctatccgatgtgggacttgg 20760759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 400
Target Start/End: Original strand, 8559733 - 8559777
Alignment:
Q  356 tatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||| |||||||| |||||||||||||||||||||    
T  8559733 tatatactcttctcaagagtcttatctatccgatgtgggacttgg 8559777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 42228822 - 42228778
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggactt 398  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||    
T  42228822 tttataaactcttctcaagagtcttgtctatccgatgtgggactt 42228778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 5720920 - 5720966
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| |||||||| |||||||||||||||||||||    
T  5720920 tttataaactcttctcaagagtcttatctatccgatgtgggacttgg 5720966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 15010874 - 15010920
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| | ||||||| ||||||||||||||||||||||||||||||    
T  15010874 tttataaattcttctcaagagtcttgtctatccgatgtgggacttgg 15010920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 40902446 - 40902492
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||||||||||||||||||||||| ||||||    
T  40902446 tttataaactcttctcaagagtcttgtctatccgatgtggaacttgg 40902492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 45122362 - 45122316
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||| |||||||| |||||| ||||||||||||||    
T  45122362 tttatatactcttctcaagagtcttatctatcagatgtgggacttgg 45122316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 354 - 399
Target Start/End: Complemental strand, 43599362 - 43599317
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttg 399  Q
    |||||| ||||||||| |||||||| ||||||||||||||||||||    
T  43599362 tttataaactcttctcaagagtcttatctatccgatgtgggacttg 43599317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 400
Target Start/End: Original strand, 4196010 - 4196049
Alignment:
Q  361 actcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  4196010 actcttctcaagagtcttgtctatccgatgtgggccttgg 4196049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 8559852 - 8559897
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||| |||||||  |||||||||||||||||||||    
T  8559852 tttatatactcttctcaagagtcta-tctatccgatgtgggacttgg 8559897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 10989087 - 10989133
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||||||||||||| | ||||||||||||||    
T  10989087 tttataaactcttctcaagagtcttgtctacctgatgtgggacttgg 10989133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 16454688 - 16454734
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||  |||||||| ||||||||||||| |||||||    
T  16454688 tttatatactcttcttaagagtcttatctatccgatgtgagacttgg 16454734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 35561717 - 35561671
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||| |||| |||||||||||||||||||||    
T  35561717 tttataaactcttctcaagaatcttatctatccgatgtgggacttgg 35561671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 356 - 400
Target Start/End: Complemental strand, 33435932 - 33435888
Alignment:
Q  356 tatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||| |||||| || |||||||| |||||||||||||||||||||    
T  33435932 tataaactcttatcaagagtcttatctatccgatgtgggacttgg 33435888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 39808650 - 39808696
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  39808650 tttataaactcttctcaagagtcttgtctatccgatgtgggacttgg 39808696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 23396660 - 23396614
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||| |||||||| |||||||| ||||||||||||    
T  23396660 tttatatactcttctcaagagtcttatctatccgttgtgggacttgg 23396614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 400
Target Start/End: Original strand, 6214298 - 6214334
Alignment:
Q  364 cttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||||||||||||||||||||||||    
T  6214298 cttctcaagagtcttgtctatccgatgtgggacttgg 6214334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 400
Target Start/End: Complemental strand, 16565150 - 16565103
Alignment:
Q  353 atttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    ||||||| |||||| || |||||||| |||||||||||||||||||||    
T  16565150 atttataaactcttatcaagagtcttatctatccgatgtgggacttgg 16565103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 400
Target Start/End: Original strand, 16600512 - 16600559
Alignment:
Q  353 atttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    ||||||| |||||| || |||||||| |||||||||||||||||||||    
T  16600512 atttataaactcttatcaagagtcttatctatccgatgtgggacttgg 16600559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 6782877 - 6782831
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| |||||||| ||||||||||||| |||||||    
T  6782877 tttataaactcttctcaagagtcttatctatccgatgtgagacttgg 6782831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 6783089 - 6783043
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| |||||||| ||||||||||||| |||||||    
T  6783089 tttataaactcttctcaagagtcttatctatccgatgtgagacttgg 6783043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 9378844 - 9378798
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| |||||||| ||||| |||||||||||||||    
T  9378844 tttataaactcttctcaagagtcttatctattcgatgtgggacttgg 9378798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 9379051 - 9379005
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| |||||||| |||||||||||||| ||||||    
T  9379051 tttataaactcttctcaagagtcttatctatccgatgtggaacttgg 9379005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 29252627 - 29252581
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| |||||||| ||||||||| |||||||||||    
T  29252627 tttataaactcttctcaagagtcttatctatccgacgtgggacttgg 29252581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 48114048 - 48114002
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| |||||| || |||||||| |||||||||||||||||||||    
T  48114048 tttataaactcttatcaagagtcttatctatccgatgtgggacttgg 48114002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 356 - 400
Target Start/End: Original strand, 35866694 - 35866738
Alignment:
Q  356 tatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||| |||||| || |||||||| |||||||||||||||||||||    
T  35866694 tataaactcttatcaagagtcttatctatccgatgtgggacttgg 35866738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 390
Target Start/End: Original strand, 39808517 - 39808553
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatg 390  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  39808517 tttataaactcttctcaagagtcttgtctatccgatg 39808553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 6623478 - 6623524
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||    
T  6623478 tttatatactcttctcaagagtcttatctatccgatgtgggacttgg 6623524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 15101164 - 15101210
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  15101164 tttataaactcttctcaagagtcttgtctatccgatgtgggacttgg 15101210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 16877063 - 16877109
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  16877063 tttataaactcttctcaagagtcttgtctatccgatgtgggacttgg 16877109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 11313435 - 11313481
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||| |||||||| |||||||||||||||| ||||    
T  11313435 tttatatactcttctcaagagtcttatctatccgatgtgggatttgg 11313481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 24558634 - 24558588
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||| |||||||| |||||| ||||||||||||||    
T  24558634 tttatatactcttctcaagagtcttatctatctgatgtgggacttgg 24558588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 16590235 - 16590189
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| | ||||| | ||||||||||||||||||||||||||||||    
T  16590235 tttataaattcttcccaagagtcttgtctatccgatgtgggacttgg 16590189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 16605145 - 16605191
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| | ||||| | ||||||||||||||||||||||||||||||    
T  16605145 tttataaattcttcccaagagtcttgtctatccgatgtgggacttgg 16605191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 16876883 - 16876929
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||| ||||| |||||||||||||||| |||||||||||||    
T  16876883 tttataaactattctcaagagtcttgtctatcctatgtgggacttgg 16876929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 5269326 - 5269370
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggactt 398  Q
    |||||| ||||||||| |||||||| ||||||||||||| |||||    
T  5269326 tttataaactcttctcaagagtcttatctatccgatgtgagactt 5269370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 48157 - 48203
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  48157 tttataaactcttctcaagagtcttgtctatccgatgtgggacttgg 48203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 11632482 - 11632436
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  11632482 tttataaactcttctcaagagtcttgtctatccgatgtgggacttgg 11632436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 28358088 - 28358134
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  28358088 tttataaactcttctcaagagtcttgtctatccgatgtgggacttgg 28358134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 34457354 - 34457308
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  34457354 tttataaactcttctcaagagtcttgtctatccgatgtgggacttgg 34457308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 43490516 - 43490562
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  43490516 tttataaactcttctcaagagtcttgtctatccgatgtgggacttgg 43490562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 2908615 - 2908661
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||| ||||| ||||||||||||||||||||||||||||||    
T  2908615 tttataaactattctcaagagtcttgtctatccgatgtgggacttgg 2908661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 24125113 - 24125067
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||| |||||||||| |||||||||| ||||||||    
T  24125113 tttatatactcttctcaagagtcttgtttatccgatgtaggacttgg 24125067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 34457147 - 34457101
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||||||    
T  34457147 tttataaactcttctcaagagtcttgtctatccgatatgggacttgg 34457101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 35527041 - 35527087
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| |||||||| |||||||||||||||||||||    
T  35527041 tttataaactcttctcaagagtcttatctatccgatgtgggacttgg 35527087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 38376782 - 38376736
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| |||||||| |||||||||||||||||||||    
T  38376782 tttataaactcttctcaagagtcttatctatccgatgtgggacttgg 38376736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 40169094 - 40169140
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||| |||||||| |||||| ||||||||||||||    
T  40169094 tttatatactcttctcaagagtcttatctatctgatgtgggacttgg 40169140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 43490309 - 43490355
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| |||||||| |||||||||||||||||||||    
T  43490309 tttataaactcttctcaagagtcttatctatccgatgtgggacttgg 43490355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 354 - 399
Target Start/End: Original strand, 37656785 - 37656830
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttg 399  Q
    |||||||||||||||| |||||||| ||||||||||||| ||||||    
T  37656785 tttatatactcttctcaagagtcttatctatccgatgtgagacttg 37656830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 354 - 399
Target Start/End: Original strand, 37781897 - 37781942
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttg 399  Q
    |||||||||||||||| |||||||| ||||||||||||| ||||||    
T  37781897 tttatatactcttctcaagagtcttatctatccgatgtgagacttg 37781942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 400
Target Start/End: Complemental strand, 15286901 - 15286858
Alignment:
Q  357 atatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    ||||||||||||| |||||||| ||||||||||||| |||||||    
T  15286901 atatactcttctcaagagtcttatctatccgatgtgagacttgg 15286858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 397
Target Start/End: Original strand, 15510557 - 15510600
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggact 397  Q
    |||||| ||||||||| |||||| ||||||||||||||||||||    
T  15510557 tttataaactcttctcaagagtcgtgtctatccgatgtgggact 15510600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 400
Target Start/End: Original strand, 35527201 - 35527240
Alignment:
Q  361 actcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    ||||||||| |||||||| |||||||||||||||||||||    
T  35527201 actcttctcaagagtcttatctatccgatgtgggacttgg 35527240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 400
Target Start/End: Complemental strand, 39268070 - 39268023
Alignment:
Q  353 atttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    ||||||| |||||| || |||||||| |||||||||||||||||||||    
T  39268070 atttataaactcttatcaagagtcttatctatccgatgtgggacttgg 39268023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 396
Target Start/End: Complemental strand, 3762957 - 3762915
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggac 396  Q
    |||||| ||||||||| |||||||| |||||||||||||||||    
T  3762957 tttataaactcttctcaagagtcttatctatccgatgtgggac 3762915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 18914214 - 18914260
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||| ||||| ||||||||| ||||||||||||||||||||    
T  18914214 tttataaacttttctcaagagtcttgactatccgatgtgggacttgg 18914260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 18914421 - 18914467
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||| ||||| ||||||||| ||||||||||||||||||||    
T  18914421 tttataaacttttctcaagagtcttgactatccgatgtgggacttgg 18914467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 30592479 - 30592433
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||| ||||| |||||||| ||||||||||||| |||||||    
T  30592479 tttatatacttttctcaagagtcttatctatccgatgtgagacttgg 30592433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 372 - 400
Target Start/End: Complemental strand, 28156069 - 28156041
Alignment:
Q  372 gagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||||||||||||||||    
T  28156069 gagtcttgtctatccgatgtgggacttgg 28156041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 39268279 - 39268231
Alignment:
Q  352 aatttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||| |||||| || ||||| || |||||||||||||||||||||    
T  39268279 aatttataaactcttatcaagagttttatctatccgatgtgggacttgg 39268231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 12314629 - 12314583
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  12314629 tttatatgctcttctcaagagtcttgtctatccgatgtgggacttgg 12314583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 15392076 - 15392030
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||    
T  15392076 tttatatactcttctcaagagtcttatctatccgatgtgggacttgg 15392030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 29273278 - 29273324
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  29273278 tttataaactcttctcaagagtcttgtctatccgatgtgggacttgg 29273324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 43361605 - 43361651
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  43361605 tttataaactcttctcaagagtcttgtctatccgatgtgggacttgg 43361651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 43361810 - 43361856
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||    
T  43361810 tttataaactcttctcaagagtcttgtctatccgatgtgggacttgg 43361856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 52846902 - 52846948
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||    
T  52846902 tttatatactcttctcaagagtcttatctatccgatgtgggacttgg 52846948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 354 - 397
Target Start/End: Complemental strand, 11590471 - 11590428
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggact 397  Q
    |||||| ||||||||| |||||||||||||||||||||||||||    
T  11590471 tttataaactcttctcaagagtcttgtctatccgatgtgggact 11590428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 400
Target Start/End: Complemental strand, 9380947 - 9380905
Alignment:
Q  358 tatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||| ||||||||||||||||||||||||||||||    
T  9380947 tatactattctcaagagtcttgtctatccgatgtgggacttgg 9380905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 15391799 - 15391753
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||| ||||| |||||||| |||||||||||||||||||||    
T  15391799 tttatatacttttctcaagagtcttatctatccgatgtgggacttgg 15391753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 29265969 - 29265923
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||| |||||||| || ||||||||||||||||||    
T  29265969 tttatatactcttctcaagagtcttatccatccgatgtgggacttgg 29265923  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 39649137 - 39649183
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| |||||||| |||||||||||||||||||||    
T  39649137 tttataaactcttctcaagagtcttatctatccgatgtgggacttgg 39649183  T

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Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 48558374 - 48558420
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||| |||||||| |||||||||| ||||||||||    
T  48558374 tttatatactcttctcaagagtcttatctatccgatatgggacttgg 48558420  T

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Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 354 - 395
Target Start/End: Original strand, 2997314 - 2997355
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtggga 395  Q
    |||||||||||||||| |||||||| ||||||||||||||||    
T  2997314 tttatatactcttctcaagagtcttatctatccgatgtggga 2997355  T

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Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 9381146 - 9381109
Alignment:
Q  358 tatactcttctcgagagtcttgtctatccgatgtggga 395  Q
    |||||||||||| |||||||||||||||||||||||||    
T  9381146 tatactcttctcaagagtcttgtctatccgatgtggga 9381109  T

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Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 2997109 - 2997153
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggactt 398  Q
    |||||||||||||||| ||||| || |||||||||||||||||||    
T  2997109 tttatatactcttctcaagagttttatctatccgatgtgggactt 2997153  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 393
Target Start/End: Complemental strand, 9381354 - 9381315
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgg 393  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  9381354 tttatatattcttctcaagagtcttgtctatccgatgtgg 9381315  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 393
Target Start/End: Complemental strand, 15391870 - 15391831
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgg 393  Q
    |||||||||||||||| |||||||| ||||||||||||||    
T  15391870 tttatatactcttctcaagagtcttatctatccgatgtgg 15391831  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 33342331 - 33342377
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||||||||||||| |||||||  |||||| ||||||||||||||    
T  33342331 tttatatactcttctcaagagtctcatctatctgatgtgggacttgg 33342377  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 399
Target Start/End: Complemental strand, 13959453 - 13959408
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttg 399  Q
    |||||| ||||||||| |||||||| ||||||||||||| ||||||    
T  13959453 tttataaactcttctcaagagtcttatctatccgatgtgagacttg 13959408  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 400
Target Start/End: Original strand, 24382213 - 24382250
Alignment:
Q  363 tcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  24382213 tcttctcaagagtcttatctatccgatgtgggacttgg 24382250  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 400
Target Start/End: Complemental strand, 39648877 - 39648840
Alignment:
Q  363 tcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  39648877 tcttctcaagagtcttatctatccgatgtgggacttgg 39648840  T

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Target: scaffold0434 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 396
Target Start/End: Complemental strand, 13357 - 13315
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggac 396  Q
    |||||| ||||||||| ||||||||||||||||||||||||||    
T  13357 tttataaactcttctcaagagtcttgtctatccgatgtgggac 13315  T

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Target: scaffold0434; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 13564 - 13518
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||||||    
T  13564 tttataaactcttctcaagagtcttgtctatccgatttgggacttgg 13518  T

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Target: scaffold0029 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 400
Target Start/End: Complemental strand, 76903 - 76857
Alignment:
Q  354 tttatatactcttctcgagagtcttgtctatccgatgtgggacttgg 400  Q
    |||||| ||||||||| |||||||| |||||||||||||||||||||    
T  76903 tttataaactcttctcaagagtcttatctatccgatgtgggacttgg 76857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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