View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8228_low_31 (Length: 272)
Name: NF8228_low_31
Description: NF8228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8228_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 37965228 - 37964975
Alignment:
| Q |
1 |
cactctttttctatacacgtccaatacatgtatgcatttccccaagcttccaattaaatctatttgggtttaacaaatgtatcattttcttgtttaacaa |
100 |
Q |
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| T |
37965228 |
cactctttttctatacacgtccaatacatgcatgcatttccccaagcttccaattaaatctatttgggtttaacaaatgtatcattttcttgtttaacaa |
37965129 |
T |
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| Q |
101 |
ctcatgctgatcttcctgtaatgtttcatatgactacaactttagaacattcaatcaacatttatctatagctataaatatctttaagcatgtaaaataa |
200 |
Q |
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| T |
37965128 |
ctcatgctgatcttcctgtaatgtttcatatgactacaactttagaacattcaatcaacatttatctatagctataaatatctttaagcatgtaaaataa |
37965029 |
T |
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| Q |
201 |
tggtattgtagtactaataatggtcttgagtggaaattgatacaatggtggatt |
254 |
Q |
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| T |
37965028 |
tggtattgtagtactaataatggtcttgagtggaaattgatataatggtggatt |
37964975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 126
Target Start/End: Complemental strand, 37305276 - 37305153
Alignment:
| Q |
5 |
ctttttctatacacgtccaatacatgtatgcatttccccaagcttccaattaaatctat--ttgggtttaacaaatgtatcattttcttgtttaacaact |
102 |
Q |
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| T |
37305276 |
cttttcctatacacgtccaatatatgcatgcatttccccaaactttgaattaaaggtgtgctagggtttaacaactttatgattttctcgtctaacaact |
37305177 |
T |
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| Q |
103 |
catgctgatcttcctgtaatgttt |
126 |
Q |
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| T |
37305176 |
catgatgatcttcctgtaatgttt |
37305153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 131
Target Start/End: Complemental strand, 37282549 - 37282506
Alignment:
| Q |
88 |
tcttgtttaacaactcatgctgatcttcctgtaatgtttcatat |
131 |
Q |
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| T |
37282549 |
tcttatttaacaactcatgatgatctttctgtaatgtttcatat |
37282506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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