View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8228_low_34 (Length: 255)
Name: NF8228_low_34
Description: NF8228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8228_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 22 - 247
Target Start/End: Original strand, 21556324 - 21556549
Alignment:
| Q |
22 |
ccttagggcattagttagaatactaaaaatagtaagtttatataaaattttgtgtaattattgcattaacaaaagaaacaagttgaatttacaagacnnn |
121 |
Q |
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| T |
21556324 |
ccttagggcattagttagaatactaaaaatagtaagtttatataaaattttgtgtaattattgcattaacaaaagaaacaagttgaatttacaagacaaa |
21556423 |
T |
|
| Q |
122 |
nnnnnnttaatagaatttttaaacaatgtttttagggaactcgttagcaaaacgtatatttattgtagttactcattaatcagagacataaacacaattg |
221 |
Q |
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| T |
21556424 |
aaaaaattaatagaatttttaaacaatatttttagggaactcgttagtaaaacgtatagttattgtagttgctcattaatcagagacataaacacaattg |
21556523 |
T |
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| Q |
222 |
atcgaccctgtgatcgtatatcatag |
247 |
Q |
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||||||||| |||||||||||||||| |
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| T |
21556524 |
atcgaccctatgatcgtatatcatag |
21556549 |
T |
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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 13268224 - 13268160
Alignment:
| Q |
24 |
ttagggcattagttagaatactaaaaatagtaagtttatataaaattttgtgtaattattgcatt |
88 |
Q |
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| T |
13268224 |
ttagggcattagttatagtactaaaagtagtaagattatatataaatttgtgtaattattacatt |
13268160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 8034711 - 8034782
Alignment:
| Q |
28 |
ggcattagttagaatactaaaaatagtaagtttatataaaattttgtgtaattattgcattaacaaaagaaa |
99 |
Q |
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| T |
8034711 |
ggcattaatcagagtactaaaagtaacaagtttatataaaaatttgtataattattgcattgacaaaagaaa |
8034782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 21018266 - 21018324
Alignment:
| Q |
30 |
cattagttagaatactaaaaatagtaagtttatataaaattttgtgtaattattgcatt |
88 |
Q |
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|||| |||||| |||||||||||||||||||||||| || ||| |||||||||| |||| |
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| T |
21018266 |
cattggttagagtactaaaaatagtaagtttatatagaaatttatgtaattattacatt |
21018324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 5537595 - 5537664
Alignment:
| Q |
42 |
tactaaaaatagtaagtttatataaaattttgtgtaattattgcattaacaaaagaaacaagttgaattt |
111 |
Q |
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|||||||| |||||| |||||||||| ||||||||||||||||||| | |||| ||||||||| |||| |
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| T |
5537595 |
tactaaaagtagtaaacttatataaaaatttgtgtaattattgcattgataaaatgaacaagttgcattt |
5537664 |
T |
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