View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8228_low_35 (Length: 253)
Name: NF8228_low_35
Description: NF8228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8228_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 31348033 - 31347812
Alignment:
| Q |
20 |
tattggaaagcaacaggcaaagacaaagagattttcaagggaaatgcattaattgggatgnnnnnnncactggttttctacataggaagagctccgagtg |
119 |
Q |
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| T |
31348033 |
tattggaaagcaacgggcaaagacaaagagattttcaagggaaatgcattaattgggatgaaaaaaacattggttttctacataggaagagctccgagtg |
31347934 |
T |
|
| Q |
120 |
gtgaaaaaaccaattgggtcatgcatgaataccgattgaagggtaacacactctctgagcacaacccatccacacatggaatggtaatattgctatannn |
219 |
Q |
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| T |
31347933 |
gtgaaaaaaccaattgggtcatgcatgaataccgattgaagggtaacacactctctgagcacaacccatccacaaatggaatggtaatattgctatattt |
31347834 |
T |
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| Q |
220 |
nnnnattgctttgttttggtct |
241 |
Q |
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|||||||||||||||||| |
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| T |
31347833 |
ttttattgctttgttttggtct |
31347812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 23 - 216
Target Start/End: Complemental strand, 31358678 - 31358485
Alignment:
| Q |
23 |
tggaaagcaacaggcaaagacaaagagattttcaagggaaatgcattaattgggatgnnnnnnncactggttttctacataggaagagctccgagtggtg |
122 |
Q |
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| T |
31358678 |
tggaaagcaataggcaaagacaaagagattttcaagggaaatgcattaattgggatgaaaaaaacattggttttctacataggaagagctccgagtggtg |
31358579 |
T |
|
| Q |
123 |
aaaaaaccaattgggtcatgcatgaataccgattgaagggtaacacactctctgagcacaacccatccacacatggaatggtaatattgctata |
216 |
Q |
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| T |
31358578 |
aaaaaaccaattgggtcatgcatgaataccgattggagggtaacactctctctgagcacaacctatccacacatggaatgatagtattgctata |
31358485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 153
Target Start/End: Complemental strand, 54269613 - 54269552
Alignment:
| Q |
92 |
gttttctacataggaagagctccgagtggtgaaaaaaccaattgggtcatgcatgaataccg |
153 |
Q |
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| T |
54269613 |
gttttctacaaaggaagggcccctcgtggtgaaaagaccaaatgggtcatgcatgagtaccg |
54269552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 2919394 - 2919559
Alignment:
| Q |
20 |
tattggaaagcaacaggcaaagacaaagagattttcaagggaaatgcattaattgggatgnnnnnnncactggttttctacataggaagagctccgagtg |
119 |
Q |
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| T |
2919394 |
tattggaaagcaacaggcaaatacaaagagatttacaagggaaattcattaattgggatgaaaaaaacactagttttctacataggaagagctccgagag |
2919493 |
T |
|
| Q |
120 |
gtgaaaaaaccaattgggtcatgcatgaataccgattgaagggtaacacactctctgagcacaacc |
185 |
Q |
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| T |
2919494 |
gtgaaaaatccaactgggtcatgcatgaataccgattggagggtatctcactctctaagcacaacc |
2919559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 2924706 - 2924870
Alignment:
| Q |
20 |
tattggaaagcaacaggcaaagacaaagagattttcaagggaaatgcattaattgggatgnnnnnnncactggttttctacataggaagagctccgagtg |
119 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| || |||||||||||| ||||||||||||||| | |
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| T |
2924706 |
tattggaaagcaacaggcaaagacaaagagatttacaagggaaattcattaattgggatgaaaaaaacattggttttctacaaaggaagagctccgagag |
2924805 |
T |
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| Q |
120 |
gtgaaaaaaccaattgggtcatgcatgaataccgattgaagggtaacacactctctgagcacaac |
184 |
Q |
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| T |
2924806 |
gtgaaaaatccaactgggtcatgcatgaatacagattggagggtaactcactctctaagcacaac |
2924870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 2924896 - 2924938
Alignment:
| Q |
174 |
ctgagcacaacccatccacacatggaatggtaatattgctata |
216 |
Q |
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| T |
2924896 |
ctgagcacaacctatccacacatggaatggtaatattgctata |
2924938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 87 - 156
Target Start/End: Original strand, 3893389 - 3893458
Alignment:
| Q |
87 |
cactggttttctacataggaagagctccgagtggtgaaaaaaccaattgggtcatgcatgaataccgatt |
156 |
Q |
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| T |
3893389 |
cacttgttttctacaaaggaagagctcctaaaggtgaaaaaacaaattgggtcatgcatgaattccgatt |
3893458 |
T |
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