View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8228_low_4 (Length: 533)
Name: NF8228_low_4
Description: NF8228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8228_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 524
Target Start/End: Complemental strand, 6501010 - 6500460
Alignment:
| Q |
1 |
ataaataaatataatcaacacaagctaaatgtagataattaataagaaaaatataagctagctccaaacacatactaattttg-aggttcattgaa---- |
95 |
Q |
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||||||||||||||||||||||| ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||| |||| ||||||||| || |
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| T |
6501010 |
ataaataaatataatcaacacaaactaaatgtagacaattaataacaaaaacataagctagctccaaacacatactactttttcaggttcattcaataac |
6500911 |
T |
|
| Q |
96 |
----------ggactgactaatctagatacatgaattattcaa------------atgaatatttgcttgtaatagcaaccggattgaacacaatattta |
173 |
Q |
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| T |
6500910 |
tgatgtatctggactgactaatctagatacatgaattattcaatgaacatgaaaaatgaatatttgcttgtaatagcaaccggattgaacacaatattta |
6500811 |
T |
|
| Q |
174 |
gtactaccnnnnnnncaaggaacaatagaaagaacctggcacacaggctgtccaacacgttcaggatactccccaacagtcctagaagcagctccaataa |
273 |
Q |
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| T |
6500810 |
gtactaccaaaaaaacaaggaacaatagaaagaacctggcacacaggctgtccaacacgttcaggatactccccaacagtcctagaagcagctccaataa |
6500711 |
T |
|
| Q |
274 |
cctaaaagcaaacacattcacatattaccaaattaagaaaacacaatcaatgtacacaaaatacaaaacatgaaaatgaaagagttgattaccgcggcac |
373 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6500710 |
cctaaaagcaaacacattcacatattaacaaattaagaaaacacaatcaatgtacacaaaatacaaaacatgaaaatgaaagagttgattaccgcggcac |
6500611 |
T |
|
| Q |
374 |
ggtcacgaggatgattgaaccgacacctagaaccaaagccacaaaaaccagttctcaaatagtaagtacaatcaacctcatcaggtcgttgtggatagga |
473 |
Q |
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| T |
6500610 |
ggtcacggggatgattgaaccgacacctagaaccaaagccacaaaaaccagttctcaaatagtaagtacaatcaacctcatcaggtcgttgtggatagga |
6500511 |
T |
|
| Q |
474 |
atcttcaccactaccaccactacctaaccccaattgccacacaggttctgc |
524 |
Q |
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| T |
6500510 |
atcttcaccactaccaccactacctaaccccaattgccacataggttctgc |
6500460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 362 - 470
Target Start/End: Original strand, 49394324 - 49394432
Alignment:
| Q |
362 |
ttaccgcggcacggtcacgaggatgattgaaccgacacctagaaccaaagccacaaaaaccagttctcaaatagtaagtacaatcaacctcatcaggtcg |
461 |
Q |
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|||||||| |||||||||| ||||| || |||||||||||||||||| | || |||||||| || |||||||| || |||||||| | ||||||||||| |
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| T |
49394324 |
ttaccgcgccacggtcacgtggatggttaaaccgacacctagaaccataaccgcaaaaacctgtcctcaaataatagatacaatcagcttcatcaggtcg |
49394423 |
T |
|
| Q |
462 |
ttgtggata |
470 |
Q |
| |
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||||||||| |
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|
| T |
49394424 |
ttgtggata |
49394432 |
T |
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Back To:
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