View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8228_low_42 (Length: 239)

Name: NF8228_low_42
Description: NF8228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8228_low_42
NF8228_low_42
[»] chr2 (10 HSPs)
chr2 (69-225)||(12258104-12258257)
chr2 (88-225)||(12235181-12235317)
chr2 (114-221)||(7542722-7542829)
chr2 (117-225)||(11999886-11999994)
chr2 (117-225)||(16657085-16657193)
chr2 (123-226)||(16661566-16661669)
chr2 (117-225)||(12244974-12245082)
chr2 (117-203)||(43625924-43626010)
chr2 (118-225)||(14703900-14704007)
chr2 (117-160)||(39373417-39373460)
[»] chr7 (19 HSPs)
chr7 (117-222)||(13333024-13333129)
chr7 (116-222)||(6790007-6790113)
chr7 (124-226)||(10493949-10494051)
chr7 (117-226)||(8585274-8585383)
chr7 (116-226)||(8667910-8668020)
chr7 (117-225)||(1301956-1302064)
chr7 (124-225)||(8654942-8655043)
chr7 (124-203)||(3147786-3147865)
chr7 (123-222)||(8629027-8629126)
chr7 (136-226)||(8671217-8671307)
chr7 (123-224)||(8659856-8659957)
chr7 (123-225)||(17268431-17268533)
chr7 (123-225)||(17260733-17260835)
chr7 (113-225)||(8582192-8582304)
chr7 (124-203)||(27830450-27830529)
chr7 (117-203)||(8647388-8647474)
chr7 (117-225)||(8546124-8546232)
chr7 (113-160)||(8570868-8570915)
chr7 (113-150)||(8559900-8559937)
[»] chr4 (3 HSPs)
chr4 (116-225)||(35132938-35133047)
chr4 (116-226)||(9335458-9335568)
chr4 (117-225)||(30775744-30775852)
[»] chr5 (2 HSPs)
chr5 (117-203)||(28220465-28220551)
chr5 (135-203)||(42555530-42555598)
[»] chr1 (4 HSPs)
chr1 (127-212)||(52549098-52549183)
chr1 (116-203)||(15595550-15595638)
chr1 (117-195)||(4678126-4678204)
chr1 (118-222)||(34466362-34466466)
[»] chr6 (1 HSPs)
chr6 (123-222)||(28911077-28911176)
[»] chr8 (2 HSPs)
chr8 (123-203)||(43745361-43745441)
chr8 (118-225)||(12528996-12529103)


Alignment Details
Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 69 - 225
Target Start/End: Original strand, 12258104 - 12258257
Alignment:
Q  69 taatgctgaagtgctgaataattgaatgttgagaattacaaatgttaatttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgt 168  Q
    |||||||||||| |||||||||| |||  ||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||| ||    
T  12258104 taatgctgaagtactgaataatttaat--tgagaattacaaatgttaaatttc-cagatgctaagaggttaattggtaggaagtttagtgatcaagtagt 12258200  T
Q  169 tcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaatgacaaacc 225  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||    
T  12258201 tcaagatgatataatgttgtggccatttaaagtcactgctggtgtcaatggcaaacc 12258257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 88 - 225
Target Start/End: Complemental strand, 12235317 - 12235181
Alignment:
Q  88 aattgaatgttgagaattacaaatgttaatttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttg 187  Q
    ||||||||| ||| | |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  12235317 aattgaatgatgaaagttactaatgttaattttt-cagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatgtgatgttg 12235219  T
Q  188 tggccattcaaggtcactgctggtgtcaatgacaaacc 225  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  12235218 tggccattcaaggtcgctgctggtgtcaatgacaaacc 12235181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 7542829 - 7542722
Alignment:
Q  114 taatttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgt 213  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||| |||||||||||||| ||||| ||||     
T  7542829 taatttttgtagatgctaagaggttaattggtaggaagtttagtgatcctgttgttcaagatgatatactgttatggccattcaaggtgactgcgggtga 7542730  T
Q  214 caatgaca 221  Q
    ||||||||    
T  7542729 caatgaca 7542722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 117 - 225
Target Start/End: Complemental strand, 11999994 - 11999886
Alignment:
Q  117 tttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaa 216  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||  |||||||||||||||  | |||| |||||||||||||||||||||| ||||||    
T  11999994 ttttttcagatgctaagaggttaattggttggaagtttagtgatcttgttgttcaagatgatggattgttatggccattcaaggtcactgctgatgtcaa 11999895  T
Q  217 tgacaaacc 225  Q
    |||||||||    
T  11999894 tgacaaacc 11999886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 117 - 225
Target Start/End: Original strand, 16657085 - 16657193
Alignment:
Q  117 tttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaa 216  Q
    ||||| |||||||||| |||||||| |||||||||||||||||||  ||||||||| ||||||| || ||||||||||||||||||| ||| || || ||    
T  16657085 ttttttcagatgctaaaaggttaatcggtaggaagtttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaa 16657184  T
Q  217 tgacaaacc 225  Q
    |||||||||    
T  16657185 tgacaaacc 16657193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 123 - 226
Target Start/End: Original strand, 16661566 - 16661669
Alignment:
Q  123 cagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaatgacaa 222  Q
    |||||||||||||||||||||||||||| |||||||| |  ||||||||| | |||||| |||||||||| |||||||| | ||||||||| ||||||||    
T  16661566 cagatgctaagaggttaattggtaggaaatttagtgaccccgttgttcaaaaagatatactgttgtggccgttcaaggttattgctggtgttaatgacaa 16661665  T
Q  223 acct 226  Q
    ||||    
T  16661666 acct 16661669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 117 - 225
Target Start/End: Original strand, 12244974 - 12245082
Alignment:
Q  117 tttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaa 216  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||   ||||||  ||||||  | | || ||||| |||||||||||||||||||||||    
T  12244974 ttttttcagatgctaagagattaattggtaggaagtttagtgatcctattgttctggatgatgcattattatggccgttcaaggtcactgctggtgtcaa 12245073  T
Q  217 tgacaaacc 225  Q
    |||||||||    
T  12245074 tgacaaacc 12245082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 43626010 - 43625924
Alignment:
Q  117 tttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtca 203  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||   ||||||||| ||||||| |||||||||||||||| |||||    
T  43626010 tttttccagatgctaagaggttaatcggtaggaagtttagtgattctgttgttcaaaatgatatcatgttgtggccattcagggtca 43625924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 118 - 225
Target Start/End: Complemental strand, 14704007 - 14703900
Alignment:
Q  118 ttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaat 217  Q
    |||| ||||||||||||||||  | || ||||||||||| ||||   ||||||||||||||||| | || |||||||| |||||||||||||| ||| ||    
T  14704007 tttttcagatgctaagaggttgttgggaaggaagtttagcgatcctattgttcaagatgatatacttttatggccatttaaggtcactgctggagtcgat 14703908  T
Q  218 gacaaacc 225  Q
    ||||||||    
T  14703907 gacaaacc 14703900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 160
Target Start/End: Complemental strand, 39373460 - 39373417
Alignment:
Q  117 tttttgcagatgctaagaggttaattggtaggaagtttagtgat 160  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||    
T  39373460 ttttttcagatgctaagaggttaattggtaggaagtttaatgat 39373417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 117 - 222
Target Start/End: Original strand, 13333024 - 13333129
Alignment:
Q  117 tttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaa 216  Q
    ||||| |||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||| ||| ||||||||||    
T  13333024 ttttttcagatgctaagaggttaattggtaggaagtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgtcaa 13333123  T
Q  217 tgacaa 222  Q
     |||||    
T  13333124 cgacaa 13333129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 116 - 222
Target Start/End: Complemental strand, 6790113 - 6790007
Alignment:
Q  116 atttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtca 215  Q
    |||||| ||||||||||||||||||||||||||||||||||||||   ||||||||| ||||||| ||||| |||||||||||||||| |||||| ||||    
T  6790113 attttttcagatgctaagaggttaattggtaggaagtttagtgattctgttgttcaaaatgatatgatgttttggccattcaaggtcattgctggcgtca 6790014  T
Q  216 atgacaa 222  Q
    |||||||    
T  6790013 atgacaa 6790007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 10493949 - 10494051
Alignment:
Q  124 agatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaatgacaaa 223  Q
    ||||||||||||||||||||| ||||||||||||||||  ||||||||| | |||||||||||||||||||||||||| ||| | |||||||||||||||    
T  10493949 agatgctaagaggttaattggcaggaagtttagtgatccggttgttcaaaacgatataatgttgtggccattcaaggttacttcaggtgtcaatgacaaa 10494048  T
Q  224 cct 226  Q
    |||    
T  10494049 cct 10494051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 8585274 - 8585383
Alignment:
Q  117 tttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaa 216  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||| |   ||||||| ||    
T  8585274 ttttttcagatgccaagaggttaattggtaggaagtttagtgatcccgttgttcaaaatgatataatgttgtggccattcaaggttatctctggtgttaa 8585373  T
Q  217 tgacaaacct 226  Q
    ||||||||||    
T  8585374 tgacaaacct 8585383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 116 - 226
Target Start/End: Complemental strand, 8668020 - 8667910
Alignment:
Q  116 atttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtca 215  Q
    |||||||||||||||||||||||||||||||||||||||||||| |  |||||||||   |||||| ||||||||||||||||||| | | ||||||| |    
T  8668020 atttttgcagatgctaagaggttaattggtaggaagtttagtgaccccgttgttcaaagagatatattgttgtggccattcaaggttatttctggtgtta 8667921  T
Q  216 atgacaaacct 226  Q
    |||||||||||    
T  8667920 atgacaaacct 8667910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 117 - 225
Target Start/End: Complemental strand, 1302064 - 1301956
Alignment:
Q  117 tttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaa 216  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||  |||||||||| | || || ||||||||||||||||||||||  || ||||| ||    
T  1302064 ttttttcagatgctaagagattaattggtaggaagtttagtgattcagttgttcaaaaagacatgatgttgtggccattcaaggtcatcgccggtgtgaa 1301965  T
Q  217 tgacaaacc 225  Q
    |||||||||    
T  1301964 tgacaaacc 1301956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 124 - 225
Target Start/End: Complemental strand, 8655043 - 8654942
Alignment:
Q  124 agatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaatgacaaa 223  Q
    ||||||||||||||||||||||||||||| ||||||||   |||||||| | ||||| |||||||||||||||| ||| ||| ||||||| |||||||||    
T  8655043 agatgctaagaggttaattggtaggaagtatagtgatcctattgttcaaaaggatatcatgttgtggccattcatggttacttctggtgttaatgacaaa 8654944  T
Q  224 cc 225  Q
    ||    
T  8654943 cc 8654942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 3147865 - 3147786
Alignment:
Q  124 agatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtca 203  Q
    |||||| |||||||||||||||||||||||| |||||   ||||||||| ||||||| ||||||||||||||||||||||    
T  3147865 agatgcaaagaggttaattggtaggaagtttggtgattctgttgttcaaaatgatatgatgttgtggccattcaaggtca 3147786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 8629126 - 8629027
Alignment:
Q  123 cagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaatgacaa 222  Q
    ||||||| |||||||||||||||||||||||||||||||  ||||||||| | ||||| ||||| |||||||||||||| | | ||||| | ||||||||    
T  8629126 cagatgccaagaggttaattggtaggaagtttagtgatcctgttgttcaaaaggatatcatgttctggccattcaaggttatttctggtcttaatgacaa 8629027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 136 - 226
Target Start/End: Original strand, 8671217 - 8671307
Alignment:
Q  136 gttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaatgacaaacct 226  Q
    ||||||||||||||||||||||||||  |||||||||   |||||| ||||||||||||||||||| | | ||||||| ||||||||||||    
T  8671217 gttaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaatgacaaacct 8671307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 123 - 224
Target Start/End: Complemental strand, 8659957 - 8659856
Alignment:
Q  123 cagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaatgacaa 222  Q
    ||||||| ||||| ||||||||||||||||||||||||  |||||||||| | || || |||||||||||||||||||| |  |||||||| || |||||    
T  8659957 cagatgcaaagagattaattggtaggaagtttagtgattcagttgttcaaaaagacatgatgttgtggccattcaaggttatcgctggtgtgaacgacaa 8659858  T
Q  223 ac 224  Q
    ||    
T  8659857 ac 8659856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 123 - 225
Target Start/End: Complemental strand, 17268533 - 17268431
Alignment:
Q  123 cagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaatgacaa 222  Q
    |||||||||||||  ||||||||||||||||||||||||  || || ||| | |||||||||| ||||||||||||||||| ||| | | | ||||||||    
T  17268533 cagatgctaagagactaattggtaggaagtttagtgatcctgtggtccaaaaagatataatgtcgtggccattcaaggtcattgcggatatgaatgacaa 17268434  T
Q  223 acc 225  Q
    |||    
T  17268433 acc 17268431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 225
Target Start/End: Complemental strand, 17260835 - 17260733
Alignment:
Q  123 cagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaatgacaa 222  Q
    |||||||||||||  || |||||||||||||||||||||  || || ||| | |||||||||| ||||||||||||||||| ||| | | | ||||||||    
T  17260835 cagatgctaagagactagttggtaggaagtttagtgatcctgtggtccaaaaagatataatgtcgtggccattcaaggtcattgcggatatgaatgacaa 17260736  T
Q  223 acc 225  Q
    |||    
T  17260735 acc 17260733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 225
Target Start/End: Complemental strand, 8582304 - 8582192
Alignment:
Q  113 ttaatttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtg 212  Q
    ||||||||| ||||||| |||||||||||||| ||||| | |||||||    |||||||| | ||||| | ||||||||| ||||||||||| || ||||    
T  8582304 ttaattttttcagatgcaaagaggttaattggaaggaaatatagtgattccattgttcaaaaggatatcaagttgtggcccttcaaggtcaccgcaggtg 8582205  T
Q  213 tcaatgacaaacc 225  Q
      |||||||||||    
T  8582204 ctaatgacaaacc 8582192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 124 - 203
Target Start/End: Original strand, 27830450 - 27830529
Alignment:
Q  124 agatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtca 203  Q
    |||||||||||||||||||||||||||||| || ||| | ||||||||| | |||||||  ||||||| |||||| ||||    
T  27830450 agatgctaagaggttaattggtaggaagttcagcgatgatgttgttcaaaaagatataaacttgtggctattcaaagtca 27830529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 8647474 - 8647388
Alignment:
Q  117 tttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtca 203  Q
    ||||| ||||||||||||||||||| ||||||||||||  ||||   ||||||||  ||||||  | ||||||||||||||||||||    
T  8647474 tttttccagatgctaagaggttaatcggtaggaagttttttgattctgttgttcagaatgataagaagttgtggccattcaaggtca 8647388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 225
Target Start/End: Complemental strand, 8546232 - 8546124
Alignment:
Q  117 tttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaa 216  Q
    ||||||||||||| |||||||||||||| ||||| | |||||||    |||||||  ||||| || |||||||||| || ||||||| | | ||||| ||    
T  8546232 tttttgcagatgcaaagaggttaattggaaggaaatatagtgattcctttgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaa 8546133  T
Q  217 tgacaaacc 225  Q
    |||||||||    
T  8546132 tgacaaacc 8546124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 8570915 - 8570868
Alignment:
Q  113 ttaatttttgcagatgctaagaggttaattggtaggaagtttagtgat 160  Q
    ||||||||||||||||  |||||||||||||| ||||||| |||||||    
T  8570915 ttaatttttgcagatgtaaagaggttaattggaaggaagtatagtgat 8570868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 8559937 - 8559900
Alignment:
Q  113 ttaatttttgcagatgctaagaggttaattggtaggaa 150  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  8559937 ttaatttttgcagatgcaaagaggttaattggaaggaa 8559900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 116 - 225
Target Start/End: Complemental strand, 35133047 - 35132938
Alignment:
Q  116 atttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtca 215  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||   ||||||||||||||||| || | |||||||||||||||||||| ||||| |    
T  35133047 attttttcagatgctaaaaggttaattggtaggaagtttagtgatcctattgttcaagatgatatactgctatggccattcaaggtcactgccggtgtaa 35132948  T
Q  216 atgacaaacc 225  Q
    ||||||||||    
T  35132947 atgacaaacc 35132938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 226
Target Start/End: Original strand, 9335458 - 9335568
Alignment:
Q  116 atttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtca 215  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||  |||||||||   |||||| ||||||||||||||||||| | | ||||||| |    
T  9335458 atttttgcagatgctaagagattaactggtaggaagtttagtgatctggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgtta 9335557  T
Q  216 atgacaaacct 226  Q
    |||||||||||    
T  9335558 atgacaaacct 9335568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 117 - 225
Target Start/End: Complemental strand, 30775852 - 30775744
Alignment:
Q  117 tttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaa 216  Q
    ||||| |||||||||| ||||||||||||||||| ||||| || |  ||||||||| | |||||  |||||||||||||||||||   | ||||||| ||    
T  30775852 ttttttcagatgctaaaaggttaattggtaggaaatttagcgaccctgttgttcaaaaagatattttgttgtggccattcaaggttgtttctggtgttaa 30775753  T
Q  217 tgacaaacc 225  Q
    |||||||||    
T  30775752 tgacaaacc 30775744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 28220551 - 28220465
Alignment:
Q  117 tttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtca 203  Q
    ||||| |||||||||||||||||||||||||||||||||||||    ||||||||||||||||||| ||||||||||||||||||||    
T  28220551 ttttttcagatgctaagaggttaattggtaggaagtttagtgactctgttgttcaagatgatataaagttgtggccattcaaggtca 28220465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 42555530 - 42555598
Alignment:
Q  135 ggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtca 203  Q
    ||||||||||||||||||||| |||| | ||||||||| |||| || | ||||||||||||||||||||    
T  42555530 ggttaattggtaggaagtttaatgattatgttgttcaaaatgacatgaagttgtggccattcaaggtca 42555598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 212
Target Start/End: Original strand, 52549098 - 52549183
Alignment:
Q  127 tgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtg 212  Q
    |||||||||||||||||||| ||||||||||||||  |||||||||||||||||| |||| ||| |||||||||||||||| ||||    
T  52549098 tgctaagaggttaattggtaagaagtttagtgatcctgttgttcaagatgatatattgttatggtcattcaaggtcactgccggtg 52549183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 203
Target Start/End: Complemental strand, 15595638 - 15595550
Alignment:
Q  116 atttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagtt-gttcaagatgatataatgttgtggccattcaaggtca 203  Q
    |||||| ||||||||||||| |||||  |||||||||||||||||   ||| |||||| ||||||||| ||||||||||||||||||||    
T  15595638 attttttcagatgctaagagattaatcagtaggaagtttagtgattctgtttgttcaaaatgatataaagttgtggccattcaaggtca 15595550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 195
Target Start/End: Original strand, 4678126 - 4678204
Alignment:
Q  117 tttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccatt 195  Q
    ||||||||||||||||||||||||||||||||| || |||||||   ||||||||| | || || ||||||||||||||    
T  4678126 tttttgcagatgctaagaggttaattggtaggaggtatagtgattctgttgttcaaaaagacatcatgttgtggccatt 4678204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 34466362 - 34466466
Alignment:
Q  118 ttttgcagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaat 217  Q
    |||| |||||||||||||||||||||| || || ||||||||||  | |||||||   ||||| ||||| ||||||||||| || | ||||||||| |||    
T  34466362 tttttcagatgctaagaggttaattggcagaaaatttagtgatcctgatgttcaaacagatatgatgttatggccattcaaagttattgctggtgttaat 34466461  T
Q  218 gacaa 222  Q
    |||||    
T  34466462 gacaa 34466466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 28911176 - 28911077
Alignment:
Q  123 cagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaatgacaa 222  Q
    |||||||||||||| |||||| |||||||||||||||||  ||||||||| | |||  |||||||| ||| |||||||||| ||| ||||||||||||||    
T  28911176 cagatgctaagaggataattgataggaagtttagtgatcccgttgttcaaaacgattcaatgttgtcgccgttcaaggtcattgccggtgtcaatgacaa 28911077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 43745441 - 43745361
Alignment:
Q  123 cagatgctaagaggttaattggtaggaagtttagtgatcaagttgttcaagatgatataatgttgtggccattcaaggtca 203  Q
    ||||||||||||||||||||||||||||||||| ||||   | ||||||| ||||||| | ||||||||| ||||||||||    
T  43745441 cagatgctaagaggttaattggtaggaagtttaatgattctgatgttcaaaatgatatgaagttgtggccgttcaaggtca 43745361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 225
Target Start/End: Complemental strand, 12529103 - 12528996
Alignment:
Q  118 ttttgcagatgctaagaggttaattggtaggaagtttagtga-tcaagttgttcaagatgatataatgttgtggccattcaaggtcactgctggtgtcaa 216  Q
    |||||||||||| |||||||||||||| || |||| |||||| || | | |||||  | |||  | ||||||||||||| ||||||||||||||||  ||    
T  12529103 ttttgcagatgcaaagaggttaattggaagaaagtatagtgactcca-tagttcagaaggatcaactgttgtggccatttaaggtcactgctggtgctaa 12529005  T
Q  217 tgacaaacc 225  Q
    |||||||||    
T  12529004 tgacaaacc 12528996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University