View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8228_low_45 (Length: 234)
Name: NF8228_low_45
Description: NF8228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8228_low_45 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 2620120 - 2620351
Alignment:
| Q |
1 |
ttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaagtattaagga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
2620120 |
ttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagcattaagga |
2620219 |
T |
|
| Q |
101 |
gaatatactttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatatcaatgttgccacaagga |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
2620220 |
gaatatactttttggaagagaggatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttgccacaagga |
2620319 |
T |
|
| Q |
201 |
tatgatactcaggttagtgttgattgcttttg |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
2620320 |
tatgatactcaggttagtgttgattgcttttg |
2620351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 2432845 - 2433078
Alignment:
| Q |
1 |
ttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaagtattaagga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
2432845 |
ttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagcattaagga |
2432944 |
T |
|
| Q |
101 |
gaatatactttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatatcaatgttgccacaagga |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2432945 |
gaatatactttttggaagagaggatgctacatatgaagaaattgtggatgctgccaaagcttccaatgctcataatttcatatcaatgttgccacaagga |
2433044 |
T |
|
| Q |
201 |
tatgatactcaggttagtgttgattgcttttgtc |
234 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||| |
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|
| T |
2433045 |
tatgatactcaggttagtgttaattacttttgtc |
2433078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 2572628 - 2572410
Alignment:
| Q |
1 |
ttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaagtattaagga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
2572628 |
ttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaagcattaagga |
2572529 |
T |
|
| Q |
101 |
gaatatactttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatatcaatgttgccacaagga |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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|
| T |
2572528 |
gaatatactttttggaagagaggatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttgccacaagga |
2572429 |
T |
|
| Q |
201 |
tatgatactcaggttagtg |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2572428 |
tatgatactcaggttagtg |
2572410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 2586430 - 2586662
Alignment:
| Q |
1 |
ttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaagtattaagga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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|
| T |
2586430 |
ttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaagcatcaagga |
2586529 |
T |
|
| Q |
101 |
gaatatactttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatatcaatgttgccacaagga |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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|
| T |
2586530 |
gaatatactttttggaagagaggatgctacatttgaagatgttgtggatgctgctaaagcttctaatgctcataatttcatttcaatgttgccacaagga |
2586629 |
T |
|
| Q |
201 |
tatgatactcaggttagtgttgattgcttttgt |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
2586630 |
tatgatactcaggttagtgttgattgcttttgt |
2586662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 2677464 - 2677231
Alignment:
| Q |
1 |
ttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaagtattaagga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||| |
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|
| T |
2677464 |
ttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagcattatgga |
2677365 |
T |
|
| Q |
101 |
gaatatactttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatatcaatgttgccacaagga |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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|
| T |
2677364 |
gaatatactttttggaagagaggatgctacatatgaagaaatcgtggatgctgctaaagcttctaatgctcataatttcatttcaatgttgccacaagga |
2677265 |
T |
|
| Q |
201 |
tatgatactcaggttagtgttgattgcttttgtc |
234 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||| |
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|
| T |
2677264 |
tatgatactcaggttagtgttaattacttttgtc |
2677231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 2448712 - 2448930
Alignment:
| Q |
1 |
ttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaagtattaagga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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|
| T |
2448712 |
ttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagcattaagga |
2448811 |
T |
|
| Q |
101 |
gaatatactttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatatcaatgttgccacaagga |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
2448812 |
gaatatactttttggaagagaggatgctacatatgaagatgttgtggatgctgctaaagcttccaatgctcataatttcatttcattgttgccacaagga |
2448911 |
T |
|
| Q |
201 |
tatgatactcaggttagtg |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2448912 |
tatgatactcaggttagtg |
2448930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 2600206 - 2599989
Alignment:
| Q |
1 |
ttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaagtattaagga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2600206 |
ttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagcattaagga |
2600107 |
T |
|
| Q |
101 |
gaatatactttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatatcaatgttgccacaagga |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| ||| |||||||||||| | |
|
|
| T |
2600106 |
gaatatactttttggaagagaggatgctacatatgaagaaattgtgaatgctgctaaaacttctaatgctcataatttcatttcattgttgccacaagta |
2600007 |
T |
|
| Q |
201 |
tatgatactcaggttagt |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
2600006 |
tatgatactcaggttagt |
2599989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 2645026 - 2644808
Alignment:
| Q |
1 |
ttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaagtattaagga |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2645026 |
ttgatggagttgccattcataagttgcaacttcagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagcattaagga |
2644927 |
T |
|
| Q |
101 |
gaatatactttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatatcaatgttgccacaagga |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
2644926 |
gaatatactttttggaagagaggatgctacatatgaagatgttgtagatgctgctaaagtttccaatgctcataatttcatttcattgttgccacaagga |
2644827 |
T |
|
| Q |
201 |
tatgatactcaggttagtg |
219 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
2644826 |
tatgatacgcaggttagtg |
2644808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 17872802 - 17872688
Alignment:
| Q |
1 |
ttgatggagttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaagtattaagga |
100 |
Q |
| |
|
|||||||||| ||||||| ||| ||||| |||| |||||||||||| ||||| || || ||||||||||||||||| ||||||||||| ||||| || |
|
|
| T |
17872802 |
ttgatggagtagctattcgtaacttgcagattaaatggcttaggtcaatgatggggttggttagtcaagaacctgctttatttgcaacaagcattaaaga |
17872703 |
T |
|
| Q |
101 |
gaatatactttttgg |
115 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
17872702 |
gaatataatttttgg |
17872688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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