View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8228_low_5 (Length: 513)

Name: NF8228_low_5
Description: NF8228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8228_low_5
NF8228_low_5
[»] chr7 (25 HSPs)
chr7 (94-223)||(24838456-24838590)
chr7 (96-257)||(24847142-24847305)
chr7 (304-384)||(24847449-24847529)
chr7 (94-176)||(24837935-24838019)
chr7 (320-381)||(24838630-24838691)
chr7 (129-229)||(883808-883910)
chr7 (129-229)||(1243137-1243239)
chr7 (191-245)||(44235370-44235424)
chr7 (200-257)||(24171477-24171534)
chr7 (198-253)||(15050965-15051020)
chr7 (134-253)||(28175458-28175581)
chr7 (136-251)||(28543545-28543659)
chr7 (167-253)||(19683463-19683546)
chr7 (197-257)||(45672998-45673058)
chr7 (198-253)||(13438336-13438391)
chr7 (199-257)||(33980453-33980511)
chr7 (198-252)||(36112678-36112732)
chr7 (199-256)||(482404-482461)
chr7 (199-252)||(31031319-31031372)
chr7 (199-256)||(43135093-43135150)
chr7 (205-253)||(3837088-3837136)
chr7 (200-256)||(21375299-21375355)
chr7 (200-256)||(32169441-32169497)
chr7 (200-256)||(33027535-33027591)
chr7 (198-254)||(44571444-44571500)
[»] chr5 (20 HSPs)
chr5 (129-251)||(34640104-34640229)
chr5 (127-229)||(32882793-32882896)
chr5 (197-246)||(1621438-1621487)
chr5 (199-250)||(2942067-2942118)
chr5 (199-258)||(22653364-22653423)
chr5 (197-243)||(43315565-43315611)
chr5 (195-252)||(1015037-1015094)
chr5 (199-256)||(1175441-1175498)
chr5 (199-256)||(3670961-3671018)
chr5 (199-256)||(12775202-12775259)
chr5 (199-256)||(30773591-30773648)
chr5 (205-258)||(33695243-33695296)
chr5 (199-256)||(35236007-35236064)
chr5 (196-253)||(41892784-41892841)
chr5 (160-228)||(3617152-3617220)
chr5 (201-257)||(7897120-7897176)
chr5 (197-245)||(17259603-17259651)
chr5 (198-226)||(22572689-22572717)
chr5 (200-256)||(25871729-25871785)
chr5 (197-253)||(31677290-31677346)
[»] chr6 (11 HSPs)
chr6 (130-253)||(724630-724756)
chr6 (196-253)||(34544419-34544476)
chr6 (199-257)||(32560597-32560655)
chr6 (127-176)||(6329704-6329753)
chr6 (199-256)||(27720054-27720111)
chr6 (198-253)||(29052694-29052749)
chr6 (127-173)||(6338561-6338607)
chr6 (199-253)||(8014439-8014493)
chr6 (200-249)||(13692520-13692569)
chr6 (199-256)||(30810624-30810681)
chr6 (198-250)||(29490224-29490276)
[»] chr2 (17 HSPs)
chr2 (129-244)||(40909980-40910097)
chr2 (129-244)||(44984222-44984343)
chr2 (197-253)||(27679227-27679283)
chr2 (128-250)||(21721844-21721969)
chr2 (199-257)||(14452957-14453015)
chr2 (199-257)||(14454150-14454208)
chr2 (203-253)||(15967966-15968016)
chr2 (135-253)||(31063030-31063151)
chr2 (199-253)||(42139523-42139577)
chr2 (197-226)||(4751782-4751811)
chr2 (164-226)||(8752571-8752634)
chr2 (199-256)||(38843476-38843533)
chr2 (199-256)||(38880184-38880241)
chr2 (199-256)||(44276424-44276481)
chr2 (198-242)||(5946594-5946638)
chr2 (200-256)||(9263748-9263804)
chr2 (197-229)||(36624976-36625008)
[»] chr8 (17 HSPs)
chr8 (197-253)||(8407583-8407639)
chr8 (199-254)||(25133741-25133796)
chr8 (199-253)||(2111013-2111067)
chr8 (199-254)||(29050643-29050698)
chr8 (198-253)||(35764722-35764777)
chr8 (199-253)||(28947333-28947387)
chr8 (127-225)||(12525078-12525181)
chr8 (197-253)||(25019512-25019568)
chr8 (199-258)||(9211662-9211721)
chr8 (199-257)||(35020974-35021032)
chr8 (199-253)||(43408672-43408726)
chr8 (199-256)||(2641825-2641882)
chr8 (199-252)||(25099576-25099629)
chr8 (127-179)||(12367510-12367562)
chr8 (197-245)||(14896450-14896498)
chr8 (206-254)||(20516115-20516163)
chr8 (198-258)||(34394770-34394830)
[»] chr4 (20 HSPs)
chr4 (199-258)||(22431462-22431521)
chr4 (203-253)||(17425592-17425642)
chr4 (199-253)||(44555588-44555642)
chr4 (127-253)||(24418123-24418250)
chr4 (196-253)||(39276508-39276565)
chr4 (199-258)||(17716349-17716408)
chr4 (132-253)||(20435503-20435625)
chr4 (199-253)||(34812689-34812743)
chr4 (127-229)||(52831520-52831620)
chr4 (198-254)||(47093497-47093553)
chr4 (203-258)||(29060996-29061051)
chr4 (196-251)||(37713448-37713503)
chr4 (197-251)||(36452841-36452895)
chr4 (199-257)||(43939462-43939520)
chr4 (127-253)||(47789385-47789514)
chr4 (196-253)||(6323865-6323922)
chr4 (196-245)||(25886116-25886165)
chr4 (199-256)||(35580359-35580416)
chr4 (200-253)||(52986374-52986427)
chr4 (199-252)||(53284690-53284743)
[»] chr3 (16 HSPs)
chr3 (127-253)||(32582519-32582646)
chr3 (197-253)||(32109888-32109944)
chr3 (199-258)||(32025664-32025723)
chr3 (199-254)||(45355857-45355912)
chr3 (127-253)||(13799903-13800033)
chr3 (198-253)||(9198062-9198117)
chr3 (198-253)||(20873079-20873134)
chr3 (199-257)||(42218283-42218341)
chr3 (199-257)||(43861407-43861465)
chr3 (207-252)||(11042063-11042108)
chr3 (197-226)||(38053580-38053609)
chr3 (199-252)||(41991000-41991053)
chr3 (199-256)||(46972717-46972774)
chr3 (199-256)||(52165502-52165559)
chr3 (200-256)||(37528152-37528208)
chr3 (199-255)||(39720083-39720139)
[»] chr1 (16 HSPs)
chr1 (198-251)||(23908839-23908892)
chr1 (130-253)||(31117613-31117737)
chr1 (199-254)||(9422496-9422551)
chr1 (197-252)||(21516524-21516579)
chr1 (199-258)||(34319216-34319275)
chr1 (198-253)||(35058682-35058737)
chr1 (198-251)||(30173415-30173468)
chr1 (204-253)||(35926534-35926583)
chr1 (197-249)||(1415881-1415933)
chr1 (197-253)||(1714053-1714109)
chr1 (127-226)||(22593549-22593651)
chr1 (210-253)||(32602949-32602992)
chr1 (171-229)||(10518352-10518410)
chr1 (197-253)||(3949652-3949708)
chr1 (197-245)||(11624438-11624486)
chr1 (200-256)||(40888500-40888556)
[»] scaffold0010 (1 HSPs)
scaffold0010 (202-253)||(166740-166791)
[»] scaffold0349 (1 HSPs)
scaffold0349 (199-256)||(9476-9533)
[»] scaffold0040 (1 HSPs)
scaffold0040 (127-249)||(49787-49911)
[»] scaffold0330 (1 HSPs)
scaffold0330 (199-252)||(7704-7757)
[»] scaffold0009 (1 HSPs)
scaffold0009 (199-259)||(192721-192781)


Alignment Details
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 94 - 223
Target Start/End: Original strand, 24838456 - 24838590
Alignment:
Q  94 aggaaagtcaaatagtttatta-ttaaagtttgt-gcttatcactttttacctcaattttaccccaaaaattttaattgaaaaaataagtagcaattaaa 191  Q
    |||||||||||||||||||| | |||||| |||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||  |||||||    
T  24838456 aggaaagtcaaatagtttataacttaaagcttgtcgcttatcactttttccctcaattttaccccaaacattttaattgaaaaaataaatattaattaaa 24838555  T
Q  192 taccat---tttttatgtcatttcatatttataag 223  Q
    ||  ||   ||||||||| ||||||||||||||||    
T  24838556 tataatttatttttatgttatttcatatttataag 24838590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 96 - 257
Target Start/End: Original strand, 24847142 - 24847305
Alignment:
Q  96 gaaagtcaaatagtttatta-ttaaagtttgt-gcttatcactttttacctcaattttaccccaaaaattttaattgaaaaaataagtagcaattaaata 193  Q
    |||||||||||||||||| | ||||||   || |||||||||||||||||||||||||||||| |||||||||||||||||||| | ||  |||||||||    
T  24847142 gaaagtcaaatagtttataacttaaagcccgtcgcttatcactttttacctcaattttacccctaaaattttaattgaaaaaattaatattaattaaata 24847241  T
Q  194 cca-ttttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttcaa 257  Q
      | |||||||||| ||||| |||||||||||| | || |||  |||||||| ||||||||||||    
T  24847242 taatttttttatgttatttcttatttataagct-cgttaaccgttaattttatcaaacacttcaa 24847305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 304 - 384
Target Start/End: Original strand, 24847449 - 24847529
Alignment:
Q  304 cttatacatccttttatgtttcagatttatttatttttggatactttgggtacttgctgtatggaatcaaatcgacttgat 384  Q
    |||||||| |||| ||||||||||||||||||||||||| |||||||  ||||||| |||||||||||||||||| |||||    
T  24847449 cttatacacccttctatgtttcagatttatttatttttgcatacttttagtacttgttgtatggaatcaaatcgatttgat 24847529  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 94 - 176
Target Start/End: Original strand, 24837935 - 24838019
Alignment:
Q  94 aggaaagtcaaatagtttatta-ttaaagtttgt-gcttatcactttttacctcaattttaccccaaaaattttaattgaaaaaa 176  Q
    |||||||||||||||||||| | |||||| | |  |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24837935 aggaaagtcaaatagtttataacttaaagctcgccgcttatcactttttacctcaattttacccctaaaattttaattgaaaaaa 24838019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 320 - 381
Target Start/End: Original strand, 24838630 - 24838691
Alignment:
Q  320 tgtttcagatttatttatttttggatactttgggtacttgctgtatggaatcaaatcgactt 381  Q
    ||||||||||||||||||||||| |||||||  ||||||| |||||||||||||||||||||    
T  24838630 tgtttcagatttatttatttttgcatacttttagtacttgttgtatggaatcaaatcgactt 24838691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 129 - 229
Target Start/End: Original strand, 883808 - 883910
Alignment:
Q  129 ttatcactttttacctcaattttaccccaaaaattttaattgaaaaaa-taagtagcaattaaatac-cattttttatgtcatttcatatttataagcta 226  Q
    ||||||||||||| ||| ||||||||||   |||  |||||||||||| ||| ||  |||||||| | ||||||||||||||||||||||||||||||||    
T  883808 ttatcactttttatctccattttacccctgcaatcctaattgaaaaaaataaatactaattaaatgcacattttttatgtcatttcatatttataagcta 883907  T
Q  227 ctt 229  Q
    |||    
T  883908 ctt 883910  T

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Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 129 - 229
Target Start/End: Original strand, 1243137 - 1243239
Alignment:
Q  129 ttatcactttttacctcaattttaccccaaaaattttaattgaaaaaa-taagtagcaattaaatac-cattttttatgtcatttcatatttataagcta 226  Q
    ||||||||||||| ||| ||||||||||   |||  |||||||||||| ||| ||  |||||||| | ||||||||||||||||||||||||||||||||    
T  1243137 ttatcactttttatctccattttacccctgcaatcctaattgaaaaaaataaatactaattaaatgcacattttttatgtcatttcatatttataagcta 1243236  T
Q  227 ctt 229  Q
    |||    
T  1243237 ctt 1243239  T

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Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 191 - 245
Target Start/End: Complemental strand, 44235424 - 44235370
Alignment:
Q  191 ataccattttttatgtcatttcatatttataagctactttgaccactaattttac 245  Q
    |||||||||||||||||||||||||||||||| ||||||  ||| ||||||||||    
T  44235424 ataccattttttatgtcatttcatatttataaactacttcaaccgctaattttac 44235370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 24171477 - 24171534
Alignment:
Q  200 tttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttcaa 257  Q
    |||||||||||| |||||||| ||||| ||  ||||||||||||||||||||||||||    
T  24171477 tttatgtcattttatatttatcagctagttgaaccactaattttaccaaacacttcaa 24171534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 198 - 253
Target Start/End: Original strand, 15050965 - 15051020
Alignment:
Q  198 tttttatgtcatttcatatttataagctactttgaccactaattttaccaaacact 253  Q
    |||||||||||||||||| | |||||||| ||  ||||||||||||||||||||||    
T  15050965 tttttatgtcatttcatactcataagctagttcaaccactaattttaccaaacact 15051020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 134 - 253
Target Start/End: Complemental strand, 28175581 - 28175458
Alignment:
Q  134 actttttacctcaattttaccccaaaaattttaattgaaaaaataag--tagcaattaaata--ccattttttatgtcatttcatatttataagctactt 229  Q
    |||||||| || ||||||||||| | ||| ||  ||||||||||||   || ||||||||||  |  |||||||||||||||||||||| ||||||||||    
T  28175581 actttttatctgaattttacccctacaatctttgttgaaaaaataaaaatatcaattaaatatacatttttttatgtcatttcatatttgtaagctactt 28175482  T
Q  230 tgaccactaattttaccaaacact 253  Q
      ||| |||||| || ||||||||    
T  28175481 caaccgctaattatatcaaacact 28175458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 251
Target Start/End: Complemental strand, 28543659 - 28543545
Alignment:
Q  136 tttttacctcaattttaccccaaaaattttaattgaaaaaataagtagcaattaaatacc-attttttatgtcatttcatatttataagctactttgacc 234  Q
    |||||| |||||||||||||| | ||| || ||||||||  ||| ||  ||||||||||  |||||||| || ||||||||||||||| ||| ||  | |    
T  28543659 tttttatctcaattttacccctataatcttcattgaaaa--taaatattaattaaatacatattttttaagttatttcatatttataaactatttcaatc 28543562  T
Q  235 actaattttaccaaaca 251  Q
    |||||||||||||||||    
T  28543561 actaattttaccaaaca 28543545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 253
Target Start/End: Complemental strand, 19683546 - 19683463
Alignment:
Q  167 attgaaaaaataagtagcaattaaataccattttttatgtcatttcatatttataagctactttgaccactaattttaccaaacact 253  Q
    ||||||||||||| || ||||||||||   |||||| ||||||||||||||||| || |||||  ||| ||| ||||| ||||||||    
T  19683546 attgaaaaaataaatatcaattaaata---ttttttttgtcatttcatatttattagttacttcaaccgctatttttatcaaacact 19683463  T

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Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 45672998 - 45673058
Alignment:
Q  197 ttttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttcaa 257  Q
    ||||||||||||||| | ||||||||| || ||  ||| ||||||||||||||||||||||    
T  45672998 ttttttatgtcattttacatttataagttagttctaccgctaattttaccaaacacttcaa 45673058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 253
Target Start/End: Complemental strand, 13438391 - 13438336
Alignment:
Q  198 tttttatgtcatttcatatttataagctactttgaccactaattttaccaaacact 253  Q
    |||||||||||||| ||||||||||| || ||| ||| ||||||| ||||||||||    
T  13438391 tttttatgtcattttatatttataagttagtttaaccgctaatttaaccaaacact 13438336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 257
Target Start/End: Original strand, 33980453 - 33980511
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttcaa 257  Q
    ||||||||||||| ||| |||| ||| ||||  || |||||||||||||||||||||||    
T  33980453 ttttatgtcatttgatacttatcagccacttcaacaactaattttaccaaacacttcaa 33980511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 252
Target Start/End: Complemental strand, 36112732 - 36112678
Alignment:
Q  198 tttttatgtcatttcatatttataagctactttgaccactaattttaccaaacac 252  Q
    ||||||||||||||||||||||||||||| ||  || |||||||  |||||||||    
T  36112732 tttttatgtcatttcatatttataagctagttcaacaactaattgcaccaaacac 36112678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 482461 - 482404
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttca 256  Q
    ||||||||||||| |  ||||||||||| ||  ||| |||||||||||||||||||||    
T  482461 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacacttca 482404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 252
Target Start/End: Complemental strand, 31031372 - 31031319
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacac 252  Q
    ||||||||||||| |||||||| ||| ||||  || ||||||||||||||||||    
T  31031372 ttttatgtcattttatatttatcagccacttcaacaactaattttaccaaacac 31031319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 43135093 - 43135150
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttca 256  Q
    ||||||||||||| |  ||||||||||| ||  ||| |||||||||||||||||||||    
T  43135093 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacacttca 43135150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 3837088 - 3837136
Alignment:
Q  205 gtcatttcatatttataagctactttgaccactaattttaccaaacact 253  Q
    |||||| ||||||||||||||||||  ||  ||||||||||||||||||    
T  3837088 gtcattacatatttataagctacttcaacggctaattttaccaaacact 3837136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 256
Target Start/End: Original strand, 21375299 - 21375355
Alignment:
Q  200 tttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttca 256  Q
    |||||||||||| |||||||| ||||| ||  ||| ||| |||||||||||||||||    
T  21375299 tttatgtcattttatatttatcagctagttgaaccgctatttttaccaaacacttca 21375355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 256
Target Start/End: Original strand, 32169441 - 32169497
Alignment:
Q  200 tttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttca 256  Q
    |||||||||||| | |||||| ||||| ||  ||||||| |||||||||||||||||    
T  32169441 tttatgtcattttacatttatcagctagttgaaccactatttttaccaaacacttca 32169497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 256
Target Start/End: Original strand, 33027535 - 33027591
Alignment:
Q  200 tttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttca 256  Q
    |||||||||||| |||||||| ||||| ||  ||| ||| |||||||||||||||||    
T  33027535 tttatgtcattttatatttatcagctagttgaaccgctatttttaccaaacacttca 33027591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 44571444 - 44571500
Alignment:
Q  198 tttttatgtcatttcatatttataagctactttgaccactaattttaccaaacactt 254  Q
    |||||| ||||||| |||||||| ||||||||  ||  |||||||||||||||||||    
T  44571444 tttttacgtcattttatatttatcagctacttcaacagctaattttaccaaacactt 44571500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 129 - 251
Target Start/End: Original strand, 34640104 - 34640229
Alignment:
Q  129 ttatcactttttacctcaattttaccccaaa-aattttaattgaaaaaataagtagcaattaaat--accattttttatgtcatttcatatttataagct 225  Q
    ||||||||||||| ||||||||||||||    ||| | |||||||||||||| ||  |||| |||  || ||||||||||||||||||||||||||||||    
T  34640104 ttatcactttttatctcaattttaccccttgcaatctcaattgaaaaaataaatattaatttaatgcacaattttttatgtcatttcatatttataagct 34640203  T
Q  226 actttgaccactaattttaccaaaca 251  Q
    ||  | ||||||||||||||||||||    
T  34640204 acaataaccactaattttaccaaaca 34640229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 127 - 229
Target Start/End: Original strand, 32882793 - 32882896
Alignment:
Q  127 gcttatcactttttacctcaattttaccccaaaaattttaattgaaaaaa-taagtagcaattaa-ataccattttttatgtcatttcatatttataagc 224  Q
    |||| |||||||||| ||||||||||||||   ||| ||||||||||||| ||| ||  |||||| ||||| |||| |||||||||||||||||||||||    
T  32882793 gcttctcactttttatctcaattttacccctgcaatcttaattgaaaaaaataaatattaattaatataccctttt-tatgtcatttcatatttataagc 32882891  T
Q  225 tactt 229  Q
    |||||    
T  32882892 tactt 32882896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 1621487 - 1621438
Alignment:
Q  197 ttttttatgtcatttcatatttataagctactttgaccactaattttacc 246  Q
    |||||||||||||||||||||||||||||||||  ||| |||||||||||    
T  1621487 ttttttatgtcatttcatatttataagctacttcaaccgctaattttacc 1621438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 2942067 - 2942118
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaac 250  Q
    ||||||||||||| ||||||||||| || ||  |||||||||||||||||||    
T  2942067 ttttatgtcattttatatttataagttagttcaaccactaattttaccaaac 2942118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 22653364 - 22653423
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttcaac 258  Q
    ||||||||||||| | |||||| ||||| ||  ||| |||||||||||||||||||||||    
T  22653364 ttttatgtcattttacatttatcagctagttgaaccgctaattttaccaaacacttcaac 22653423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 43315611 - 43315565
Alignment:
Q  197 ttttttatgtcatttcatatttataagctactttgaccactaatttt 243  Q
    ||||||||| |||||||||||||||||||| ||  ||||||||||||    
T  43315611 ttttttatgacatttcatatttataagctagttcaaccactaatttt 43315565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 1015037 - 1015094
Alignment:
Q  195 cattttttatgtcatttcatatttataagctactttgaccactaattttaccaaacac 252  Q
    |||||||||||||||||||||| ||| ||||||||  | || |||||||| |||||||    
T  1015037 cattttttatgtcatttcatatctatgagctacttcaaacattaattttatcaaacac 1015094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 1175441 - 1175498
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttca 256  Q
    ||||||||||||| |  ||||||||||| ||  ||| |||||||||||||||||||||    
T  1175441 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacacttca 1175498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 3670961 - 3671018
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttca 256  Q
    ||||||||||||| |  ||||||||||| ||  ||| |||||||||||||||||||||    
T  3670961 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacacttca 3671018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 12775202 - 12775259
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttca 256  Q
    ||||||||||||| | |||||| ||||| ||  ||||||| |||||||||||||||||    
T  12775202 ttttatgtcattttacatttatcagctagttgaaccactatttttaccaaacacttca 12775259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 30773648 - 30773591
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttca 256  Q
    ||||||||||||| |  ||||||||||| ||  ||| |||||||||||||||||||||    
T  30773648 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacacttca 30773591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 258
Target Start/End: Original strand, 33695243 - 33695296
Alignment:
Q  205 gtcatttcatatttataagctactttgaccactaattttaccaaacacttcaac 258  Q
    ||||||| | |||||| ||||| ||  |||||||||||||||||||||||||||    
T  33695243 gtcattttacatttatcagctaattaaaccactaattttaccaaacacttcaac 33695296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 35236064 - 35236007
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttca 256  Q
    ||||||||||||| |  ||||||||||| ||  ||| |||||||||||||||||||||    
T  35236064 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacacttca 35236007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 253
Target Start/End: Complemental strand, 41892841 - 41892784
Alignment:
Q  196 attttttatgtcatttcatatttataagctactttgaccactaattttaccaaacact 253  Q
    ||||||||||  ||||||||||||||||||| ||| |||  ||||| |||||||||||    
T  41892841 attttttatggtatttcatatttataagctagtttaaccgttaattataccaaacact 41892784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 3617152 - 3617220
Alignment:
Q  160 aattttaattgaaaaaataagtagcaattaaataccattttttatgtcatttcatatttataagctact 228  Q
    ||||||||||| |||| ||| ||  |||| ||||| |||||||||||||||| || ||||||| |||||    
T  3617152 aattttaattggaaaagtaaatattaatttaatacaattttttatgtcattttatttttataaactact 3617220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 7897120 - 7897176
Alignment:
Q  201 ttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttcaa 257  Q
    ||||||||||| |||||||| ||||| ||  ||| ||||||||| ||||||||||||    
T  7897120 ttatgtcattttatatttatcagctagttgaaccgctaattttatcaaacacttcaa 7897176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 17259603 - 17259651
Alignment:
Q  197 ttttttatgtcatttcatatttataagctactttgaccactaattttac 245  Q
    ||||||||||||||||||| |||||||||| ||  ||| ||||||||||    
T  17259603 ttttttatgtcatttcatacttataagctagttcaaccgctaattttac 17259651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 226
Target Start/End: Original strand, 22572689 - 22572717
Alignment:
Q  198 tttttatgtcatttcatatttataagcta 226  Q
    |||||||||||||||||||||||||||||    
T  22572689 tttttatgtcatttcatatttataagcta 22572717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 25871785 - 25871729
Alignment:
Q  200 tttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttca 256  Q
    |||||||||||| | |||||| ||||| ||  ||||||| |||||||||||||||||    
T  25871785 tttatgtcattttacatttatcagctagttaaaccactatttttaccaaacacttca 25871729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 31677290 - 31677346
Alignment:
Q  197 ttttttatgtcatttcatatttataagctactttgaccactaattttaccaaacact 253  Q
    ||||| |||||||||||||||| ||||||| ||  ||| ||| ||||||||||||||    
T  31677290 tttttgatgtcatttcatatttgtaagctagttcaaccgctagttttaccaaacact 31677346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 130 - 253
Target Start/End: Original strand, 724630 - 724756
Alignment:
Q  130 tatcactttttacctcaattttaccccaaaaattttaattgaaa-aaataagtagcaattaaata--ccattttttatgtcatttcatatttataagcta 226  Q
    |||||||||||||||||||||||| |    |||||||||||||| |||||| ||  |||||||||  || |||| ||||| |||| ||||||||||||||    
T  724630 tatcactttttacctcaattttactcttgcaattttaattgaaagaaataaatattaattaaatatacctttttatatgttattttatatttataagcta 724729  T
Q  227 ctttgaccactaattttaccaaacact 253  Q
    |||  ||||||||||||| ||||||||    
T  724730 cttcaaccactaattttatcaaacact 724756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 34544419 - 34544476
Alignment:
Q  196 attttttatgtcatttcatatttataagctactttgaccactaattttaccaaacact 253  Q
    ||||||||||||||||||||||||||||||| ||  |||||||||| || ||||||||    
T  34544419 attttttatgtcatttcatatttataagctagttcaaccactaattgtatcaaacact 34544476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 257
Target Start/End: Original strand, 32560597 - 32560655
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttcaa 257  Q
    ||||||||||||| |||||||| ||| ||||  || |||||||||||||||||||||||    
T  32560597 ttttatgtcattttatatttatcagccacttcaacaactaattttaccaaacacttcaa 32560655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 6329753 - 6329704
Alignment:
Q  127 gcttatcactttttacctcaattttaccccaaaaattttaattgaaaaaa 176  Q
    ||||||||||||||| |||||||||||||| | ||| |||||||||||||    
T  6329753 gcttatcactttttagctcaattttacccctacaatcttaattgaaaaaa 6329704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 27720111 - 27720054
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttca 256  Q
    ||||||||||||| | |||||||||||| ||  ||| |||||||||||||||||||||    
T  27720111 ttttatgtcattttacatttataagctagttgaaccgctaattttaccaaacacttca 27720054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 253
Target Start/End: Original strand, 29052694 - 29052749
Alignment:
Q  198 tttttatgtcatttcatatttataagctactttgaccactaattttaccaaacact 253  Q
    |||||||||||||||||||||||||||||  |  ||| || |||||||||||||||    
T  29052694 tttttatgtcatttcatatttataagctaggtgaaccgcttattttaccaaacact 29052749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 127 - 173
Target Start/End: Complemental strand, 6338607 - 6338561
Alignment:
Q  127 gcttatcactttttacctcaattttaccccaaaaattttaattgaaa 173  Q
    ||||||||||||||| |||||||||||||| | ||| ||||||||||    
T  6338607 gcttatcactttttagctcaattttacccctacaatcttaattgaaa 6338561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 8014493 - 8014439
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacact 253  Q
    |||| ||||||||||| ||||||||||| || |||  ||||||||||||||||||    
T  8014493 ttttttgtcatttcatgtttataagctagttcgactgctaattttaccaaacact 8014439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 13692520 - 13692569
Alignment:
Q  200 tttatgtcatttcatatttataagctactttgaccactaattttaccaaa 249  Q
    ||||||||||||||||||||| | ||||||  ||||||||||||| ||||    
T  13692520 tttatgtcatttcatatttattaactacttcaaccactaattttatcaaa 13692569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 30810681 - 30810624
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttca 256  Q
    ||||||||||||| | |||||| ||||| ||  ||||||| |||||||||||||||||    
T  30810681 ttttatgtcattttacatttatcagctagttgaaccactatttttaccaaacacttca 30810624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 29490224 - 29490276
Alignment:
Q  198 tttttatgtcatttcatatttataagctactttgaccactaattttaccaaac 250  Q
    ||||||| |||||||||||||||||  |||||  |||| ||||||||||||||    
T  29490224 tttttatatcatttcatatttataaattacttcaaccattaattttaccaaac 29490276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 129 - 244
Target Start/End: Original strand, 40909980 - 40910097
Alignment:
Q  129 ttatcactttttacctcaattttaccccaaaaattttaattgaaaaaataagtagcaattaaat--accattttttatgtcatttcatatttataagcta 226  Q
    ||||||||||||| ||||||||||||| |  ||| ||||| | ||||| || ||  ||||||||  ||  ||||||||||||||||||||||||||| ||    
T  40909980 ttatcactttttatctcaattttaccctagtaatcttaatcggaaaaaaaaataaaaattaaatgcacatttttttatgtcatttcatatttataaggta 40910079  T
Q  227 ctttgaccactaatttta 244  Q
    |||| ||| |||||||||    
T  40910080 ctttaaccgctaatttta 40910097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 129 - 244
Target Start/End: Complemental strand, 44984343 - 44984222
Alignment:
Q  129 ttatcactttttacctcaattttaccccaaaaattttaattgaaaaaataagtagc----aattaaat--accattttttatgtcatttcatatttataa 222  Q
    ||||||||||||| ||||||||||||| |  ||| ||||| |||||||||| ||      ||||||||  ||  ||||||||||||||||||||||||||    
T  44984343 ttatcactttttatctcaattttaccctagtaatcttaatcgaaaaaataaataaatattaattaaatgcacatttttttatgtcatttcatatttataa 44984244  T
Q  223 gctactttgaccactaatttta 244  Q
    | |||||| ||| |||||||||    
T  44984243 ggtactttaaccgctaatttta 44984222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 27679227 - 27679283
Alignment:
Q  197 ttttttatgtcatttcatatttataagctactttgaccactaattttaccaaacact 253  Q
    |||||||||||||||||||||||||||||| ||  ||| |||||||||||| |||||    
T  27679227 ttttttatgtcatttcatatttataagctagttcaaccgctaattttaccagacact 27679283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 250
Target Start/End: Original strand, 21721844 - 21721969
Alignment:
Q  128 cttatcactttttacctcaattttaccccaaaaattttaattgaaaaa-ataagtagcaattaaat--accattttttatgtcatttcatatttataagc 224  Q
    ||||| |||||||| ||| |||||||||    ||| |||||||||||| |||| ||  ||||||||  || |||||||||||||||| ||||||||||||    
T  21721844 cttataactttttatctccattttacccttgcaatattaattgaaaaatataaataataattaaatgcacaattttttatgtcattttatatttataagc 21721943  T
Q  225 tactttgaccactaattttaccaaac 250  Q
    || ||  ||  |||||||||||||||    
T  21721944 tatttcaactgctaattttaccaaac 21721969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 257
Target Start/End: Original strand, 14452957 - 14453015
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttcaa 257  Q
    ||||||||||||| |||||||| ||| ||||  ||  ||||||||||||||||||||||    
T  14452957 ttttatgtcattttatatttatcagccacttcaacatctaattttaccaaacacttcaa 14453015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 257
Target Start/End: Complemental strand, 14454208 - 14454150
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttcaa 257  Q
    ||||||||||||| ||| |||| ||| ||||  || |||||||||||||||||||||||    
T  14454208 ttttatgtcattttatacttattagccacttcaacaactaattttaccaaacacttcaa 14454150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 15967966 - 15968016
Alignment:
Q  203 atgtcatttcatatttataagctactttgaccactaattttaccaaacact 253  Q
    |||||||||||||||||||||||| ||  ||| ||||||||||||| ||||    
T  15967966 atgtcatttcatatttataagctagttcaaccgctaattttaccaagcact 15968016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 253
Target Start/End: Original strand, 31063030 - 31063151
Alignment:
Q  135 ctttttacctcaattttaccccaaaaattttaattgaaaa-aataagtagcaattaaat--accattttttatgtcatttcatatttataagctactttg 231  Q
    ||||||| ||||||||| |||| | ||| ||||||||||| ||||| ||  ||||||||  ||  ||| ||||||||||||||||||||||  |||||      
T  31063030 ctttttatctcaattttgcccctacaatcttaattgaaaagaataaatattaattaaatgtacattttcttatgtcatttcatatttataaattacttca 31063129  T
Q  232 accactaattttaccaaacact 253  Q
    ||| ||||| ||| ||||||||    
T  31063130 accgctaatcttatcaaacact 31063151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 42139523 - 42139577
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacact 253  Q
    |||||| ||||||||||||||||||||| ||  ||  ||||||||||||||||||    
T  42139523 ttttatatcatttcatatttataagctagttcaactgctaattttaccaaacact 42139577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 226
Target Start/End: Original strand, 4751782 - 4751811
Alignment:
Q  197 ttttttatgtcatttcatatttataagcta 226  Q
    ||||||||||||||||||||||||||||||    
T  4751782 ttttttatgtcatttcatatttataagcta 4751811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 8752571 - 8752634
Alignment:
Q  164 ttaattgaaaaaataagtagcaattaaa--taccattttttatgtcatttcatatttataagcta 226  Q
    |||||||||||||||| ||  |||||||  || |||||| |||||||||||||||||||||||||    
T  8752571 ttaattgaaaaaataaatattaattaaacatatcatttt-tatgtcatttcatatttataagcta 8752634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 38843476 - 38843533
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttca 256  Q
    ||||||||||||| | |||||| ||||| ||  ||| |||||||||||||||||||||    
T  38843476 ttttatgtcattttacatttatcagctagttgaaccgctaattttaccaaacacttca 38843533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 38880241 - 38880184
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttca 256  Q
    ||||||||||||| |  ||||||||||| ||  ||| |||||||||||||||||||||    
T  38880241 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacacttca 38880184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 44276424 - 44276481
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttca 256  Q
    ||||||||||||| |  ||||||||||| ||  ||| |||||||||||||||||||||    
T  44276424 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacacttca 44276481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 5946638 - 5946594
Alignment:
Q  198 tttttatgtcatttcatatttataagctactttgaccactaattt 242  Q
    |||||||||||||||||||||| |||||||||  || ||||||||    
T  5946638 tttttatgtcatttcatatttacaagctacttcaacaactaattt 5946594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 9263804 - 9263748
Alignment:
Q  200 tttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttca 256  Q
    |||||||||||| |||||||| ||||| ||  ||| ||| |||||||||||||||||    
T  9263804 tttatgtcattttatatttatcagctagttgaaccgctatttttaccaaacacttca 9263748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 36625008 - 36624976
Alignment:
Q  197 ttttttatgtcatttcatatttataagctactt 229  Q
    |||||||||||||||||||||||||| ||||||    
T  36625008 ttttttatgtcatttcatatttataaactactt 36624976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 8407583 - 8407639
Alignment:
Q  197 ttttttatgtcatttcatatttataagctactttgaccactaattttaccaaacact 253  Q
    |||||||||||||||||||||||||||||| ||  ||| ||||||||||||||||||    
T  8407583 ttttttatgtcatttcatatttataagctagttcaaccgctaattttaccaaacact 8407639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 25133741 - 25133796
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacactt 254  Q
    ||||||||||||| |||||||| ||||||||| || ||||||||||||||||||||    
T  25133741 ttttatgtcattttatatttatcagctactttaacaactaattttaccaaacactt 25133796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 2111013 - 2111067
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacact 253  Q
    |||||||||||||||||||||||||||| ||  ||| ||||||||||||||||||    
T  2111013 ttttatgtcatttcatatttataagctagttcaaccgctaattttaccaaacact 2111067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 29050698 - 29050643
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacactt 254  Q
    ||||||||||||| |||||||| ||||||||| || ||||||||||||||| ||||    
T  29050698 ttttatgtcattttatatttatcagctactttaacaactaattttaccaaatactt 29050643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 198 - 253
Target Start/End: Original strand, 35764722 - 35764777
Alignment:
Q  198 tttttatgtcatttcatatttataagctactttgaccactaattttaccaaacact 253  Q
    ||||||||||||||||||||||||| ||| ||  ||| ||||||||||||||||||    
T  35764722 tttttatgtcatttcatatttataaactagttcaaccgctaattttaccaaacact 35764777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 28947387 - 28947333
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacact 253  Q
    |||||||||||||||||||||||||||| ||  ||||| |||||||| |||||||    
T  28947387 ttttatgtcatttcatatttataagctagttcaaccacaaattttactaaacact 28947333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 127 - 225
Target Start/End: Complemental strand, 12525181 - 12525078
Alignment:
Q  127 gcttatcactttttacctcaattttaccccaaaaattttaattgaaaaaa-taagtagcaattaaatac-catttttt---atgtcatttcatatttata 221  Q
    ||||||||||||||| |||||||||||||| | ||| |||||| |||||| ||| ||  |||||||| | ||||||||   |||| ||||||||||||||    
T  12525181 gcttatcactttttatctcaattttacccctacaatcttaattaaaaaaagtaaatattaattaaatgcacattttttcccatgtaatttcatatttata 12525082  T
Q  222 agct 225  Q
    ||||    
T  12525081 agct 12525078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 25019568 - 25019512
Alignment:
Q  197 ttttttatgtcatttcatatttataagctactttgaccactaattttaccaaacact 253  Q
    ||||||||||||||||||| ||| |||  ||||| ||| ||||||||||||||||||    
T  25019568 ttttttatgtcatttcataattacaagtgactttaaccgctaattttaccaaacact 25019512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 9211662 - 9211721
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttcaac 258  Q
    ||||||||||||| |  ||||||||||| ||  ||| |||||||||||||||||||||||    
T  9211662 ttttatgtcattttacttttataagctagttgaaccgctaattttaccaaacacttcaac 9211721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 257
Target Start/End: Original strand, 35020974 - 35021032
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttcaa 257  Q
    ||||||||||||| |||||||| ||| ||||  ||  ||||||||||||||||||||||    
T  35020974 ttttatgtcattttatatttatcagccacttcaacagctaattttaccaaacacttcaa 35021032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 43408672 - 43408726
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacact 253  Q
    |||| ||||||||||||||||||||||| ||  |  |||||||||||||||||||    
T  43408672 ttttttgtcatttcatatttataagctagttcaattactaattttaccaaacact 43408726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 2641882 - 2641825
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttca 256  Q
    ||||||||||||| |  ||||||||||| ||  ||| |||||||||||||||||||||    
T  2641882 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacacttca 2641825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 252
Target Start/End: Complemental strand, 25099629 - 25099576
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacac 252  Q
    ||||||||||||| |||||||| ||||||||  ||  |||||||||||||||||    
T  25099629 ttttatgtcattttatatttatcagctacttcaacagctaattttaccaaacac 25099576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 12367510 - 12367562
Alignment:
Q  127 gcttatcactttttacctcaattttaccccaaaaattttaattgaaaaaataa 179  Q
    |||| ||||||| || |||||||||| ||| | ||||||||||||||||||||    
T  12367510 gcttgtcactttatatctcaattttatccctacaattttaattgaaaaaataa 12367562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 14896450 - 14896498
Alignment:
Q  197 ttttttatgtcatttcatatttataagctactttgaccactaattttac 245  Q
    |||||||||| ||||||||||||||||||| ||  || |||||||||||    
T  14896450 ttttttatgtgatttcatatttataagctagttcaacaactaattttac 14896498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 20516163 - 20516115
Alignment:
Q  206 tcatttcatatttataagctactttgaccactaattttaccaaacactt 254  Q
    |||||| |||||||| | ||||||  |||||||||||||||||||||||    
T  20516163 tcattttatatttatcaactacttaaaccactaattttaccaaacactt 20516115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 258
Target Start/End: Complemental strand, 34394830 - 34394770
Alignment:
Q  198 tttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttcaac 258  Q
    |||||||||||||| | ||||||||||||  |  ||| ||||||||| |||||||||||||    
T  34394830 tttttatgtcattttacatttataagctagataaaccgctaattttatcaaacacttcaac 34394770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 22431462 - 22431521
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttcaac 258  Q
    ||||||||||||| ||||||||||| || ||  |||||||||||||||||||||||||||    
T  22431462 ttttatgtcattttatatttataagttagttgaaccactaattttaccaaacacttcaac 22431521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 203 - 253
Target Start/End: Complemental strand, 17425642 - 17425592
Alignment:
Q  203 atgtcatttcatatttataagctactttgaccactaattttaccaaacact 253  Q
    ||||||||||||||||||||| |||||  ||||||||||||||||||||||    
T  17425642 atgtcatttcatatttataagttacttcaaccactaattttaccaaacact 17425592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 44555642 - 44555588
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacact 253  Q
    ||||||||||||||||||||||||| || ||| ||| ||||||||||||||||||    
T  44555642 ttttatgtcatttcatatttataaggtagtttaaccgctaattttaccaaacact 44555588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 253
Target Start/End: Complemental strand, 24418250 - 24418123
Alignment:
Q  127 gcttatcactttttacctcaattttaccccaaaaattttaattgaaaaaataagtagcaattaaatacca--ttttttatgtcatttcatatttataagc 224  Q
    |||||||| |||||| ||  ||||||||||   ||| |||||| ||||||||| ||  |||||||| |    ||||||||||||||||||||||||||||    
T  24418250 gcttatcattttttatctttattttacccctgcaatcttaatttaaaaaataaatattaattaaatgcttacttttttatgtcatttcatatttataagc 24418151  T
Q  225 tactttgaccactaattttaccaaacact 253  Q
    |||||  || ||||| |||||||||||||    
T  24418150 tacttgaacaactaa-tttaccaaacact 24418123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 39276508 - 39276565
Alignment:
Q  196 attttttatgtcatttcatatttataagctactttgaccactaattttaccaaacact 253  Q
    |||||||||||||||| | |||||||||||| ||  ||||||||||||||||||||||    
T  39276508 attttttatgtcatttaagatttataagctagttcaaccactaattttaccaaacact 39276565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 17716349 - 17716408
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttcaac 258  Q
    ||||||||||||| | ||||||||| || ||  |||||||||||||||||||||||||||    
T  17716349 ttttatgtcattttacatttataagttagttgaaccactaattttaccaaacacttcaac 17716408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 253
Target Start/End: Original strand, 20435503 - 20435625
Alignment:
Q  132 tcactttttacctcaattttaccccaaaaattttaattgaaaaaa-taagtagcaattaaataccattttttatgtcatttcatatttataagctacttt 230  Q
    |||||||||| |||||||||||||| | ||| || |||||||||| ||| ||  |||||||| |   ||||| |||||||||||||| ||| | || ||     
T  20435503 tcactttttatctcaattttacccctacaatatttattgaaaaaattaaatattaattaaatgcatatttttttgtcatttcatattcatatgttatttc 20435602  T
Q  231 gaccactaattttaccaaacact 253  Q
     ||||||||||||| ||||||||    
T  20435603 aaccactaattttatcaaacact 20435625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 34812743 - 34812689
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacact 253  Q
    |||||||||||||||||||||||||||| ||  ||||| |||||||| |||||||    
T  34812743 ttttatgtcatttcatatttataagctagttcaaccacaaattttactaaacact 34812689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 127 - 229
Target Start/End: Original strand, 52831520 - 52831620
Alignment:
Q  127 gcttatcactttttacctcaattttaccccaaaaattttaattgaaaaaataagtagcaattaaatac-cattttttatgtcatttcatatttataagct 225  Q
    |||||||| |||||| |||||||| |||||   ||| ||||||| ||||| || ||   ||||||| | ||||||||||| |||||||||||||||||||    
T  52831520 gcttatcattttttatctcaatttgacccctgcaatcttaattggaaaaaaaatta---attaaatgcacattttttatgccatttcatatttataagct 52831616  T
Q  226 actt 229  Q
    ||||    
T  52831617 actt 52831620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 47093497 - 47093553
Alignment:
Q  198 tttttatgtcatttcatatttataagctactttgaccactaattttaccaaacactt 254  Q
    |||||||||||||| |||||||| |||||||| |||  |||| ||||||||||||||    
T  47093497 tttttatgtcattttatatttatcagctacttcgacatctaactttaccaaacactt 47093553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 258
Target Start/End: Original strand, 29060996 - 29061051
Alignment:
Q  203 atgtcatttcatatttataagctactttgaccactaattttaccaaacacttcaac 258  Q
    ||||||||| ||||||||||| || ||  ||| |||||||||||||||||||||||    
T  29060996 atgtcattttatatttataagttagttataccgctaattttaccaaacacttcaac 29061051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 37713448 - 37713503
Alignment:
Q  196 attttttatgtcatttcatatttataagctactttgaccactaattttaccaaaca 251  Q
    ||||||||||||||||||||||||||||||| ||   | |||||||||||| ||||    
T  37713448 attttttatgtcatttcatatttataagctagttccgcaactaattttacccaaca 37713503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 36452841 - 36452895
Alignment:
Q  197 ttttttatgtcatttcatatttataagctactttgaccactaattttaccaaaca 251  Q
    ||||| ||||||||||||||||||||| || || ||||| ||| |||||||||||    
T  36452841 tttttgatgtcatttcatatttataagttagttcgaccattaactttaccaaaca 36452895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 257
Target Start/End: Complemental strand, 43939520 - 43939462
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttcaa 257  Q
    ||||||||||||| ||| |||| ||| ||||  || |||||||||||||||||||||||    
T  43939520 ttttatgtcattttatacttatcagccacttcaacaactaattttaccaaacacttcaa 43939462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 127 - 253
Target Start/End: Complemental strand, 47789514 - 47789385
Alignment:
Q  127 gcttatcactttttacctcaattttaccccaaaaattttaattgaaa-aaataagtagcaattaaat--accattttttatgtcatttcatatttataag 223  Q
    |||||||||| |||| ||| |||| |||||   ||| |||||||||| |||||| ||  ||||||||  || || ||||| |||||||| |||||| |||    
T  47789514 gcttatcactatttatctccatttaacccctgcaatcttaattgaaagaaataaatattaattaaatgcacaatattttaggtcatttcgtatttagaag 47789415  T
Q  224 ctactttgaccactaattttaccaaacact 253  Q
    | ||||  ||| ||||||||||||||||||    
T  47789414 caacttcaaccgctaattttaccaaacact 47789385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 253
Target Start/End: Complemental strand, 6323922 - 6323865
Alignment:
Q  196 attttttatgtcatttcatatttataagctactttgaccactaattttaccaaacact 253  Q
    ||||||||||||||||||||||||| ||| | ||   ||||||||||||| |||||||    
T  6323922 attttttatgtcatttcatatttatcagcaagttcagccactaattttacaaaacact 6323865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 25886116 - 25886165
Alignment:
Q  196 attttttatgtcatttcatatttataagctactttgaccactaattttac 245  Q
    ||||||||||||||||||||| ||||||||| ||  |||| |||||||||    
T  25886116 attttttatgtcatttcatatctataagctagttcaaccattaattttac 25886165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 35580416 - 35580359
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttca 256  Q
    ||||||||||||| || ||||||||||| ||  |||  ||||||||||||||||||||    
T  35580416 ttttatgtcattttatgtttataagctagttgaaccgttaattttaccaaacacttca 35580359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 52986427 - 52986374
Alignment:
Q  200 tttatgtcatttcatatttataagctactttgaccactaattttaccaaacact 253  Q
    |||| ||||||||||||||| |||||||||  ||| |||||||||||| |||||    
T  52986427 tttaggtcatttcatatttagaagctacttcaaccgctaattttaccatacact 52986374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 53284690 - 53284743
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacac 252  Q
    ||||||||||||| |||||||| ||| ||||  || ||||||||||||||||||    
T  53284690 ttttatgtcattttatatttatcagccacttcaacaactaattttaccaaacac 53284743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 253
Target Start/End: Original strand, 32582519 - 32582646
Alignment:
Q  127 gcttatcactttttacctcaattttaccccaaaaattttaattgaaaaaataagtagcaattaaat--accattttttatgtcatttcatatttataagc 224  Q
    ||||||||||||||| |||||||||||||    ||| |||||||||||||||| |   | |||| |  |||  |||||||||||||||||| ||||||||    
T  32582519 gcttatcactttttatctcaattttacccttgcaatcttaattgaaaaaataaatgttacttaattgaacctctttttatgtcatttcatacttataagc 32582618  T
Q  225 tactttgaccactaattttaccaaacact 253  Q
    ||| || ||  ||||||||||||||||||    
T  32582619 tac-ttcacggctaattttaccaaacact 32582646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 32109888 - 32109944
Alignment:
Q  197 ttttttatgtcatttcatatttataagctactttgaccactaattttaccaaacact 253  Q
    |||||||||||||||||||| ||||||||| ||   |||||||||||||||||||||    
T  32109888 ttttttatgtcatttcatatatataagctagttaagccactaattttaccaaacact 32109944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 32025723 - 32025664
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttcaac 258  Q
    ||||||||||||| | ||||||||| || ||  |||||||||||||||||||||||||||    
T  32025723 ttttatgtcattttacatttataagttagttgaaccactaattttaccaaacacttcaac 32025664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 45355912 - 45355857
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacactt 254  Q
    ||||||||||||| |||||||| |||||||| ||| ||||| ||||||||||||||    
T  45355912 ttttatgtcattttatatttatcagctacttcgacaactaactttaccaaacactt 45355857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 253
Target Start/End: Complemental strand, 13800033 - 13799903
Alignment:
Q  127 gcttatcactttttacctcaattttaccccaaaaattttaattgaaaaaa---taagtagcaattaaata-ccattttttatgtcatttcatatttataa 222  Q
    ||||||||||||||| ||||||||||||||   ||| |||||||||||||   ||||||  |||||||||  | |||||||||  |||||  ||||||||    
T  13800033 gcttatcactttttatctcaattttacccctgcaatcttaattgaaaaaaaattaagtattaattaaatatactttttttatgctatttcgaatttataa 13799934  T
Q  223 gctactttgaccactaattttaccaaacact 253  Q
    | |||||  ||| ||||||||| ||| ||||    
T  13799933 ggtacttcaaccgctaattttatcaagcact 13799903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 253
Target Start/End: Complemental strand, 9198117 - 9198062
Alignment:
Q  198 tttttatgtcatttcatatttataagctactttgaccactaattttaccaaacact 253  Q
    |||||||||||||||||||||| || ||| ||  || |||||||||||||||||||    
T  9198117 tttttatgtcatttcatatttacaaactagttcaacaactaattttaccaaacact 9198062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 253
Target Start/End: Complemental strand, 20873134 - 20873079
Alignment:
Q  198 tttttatgtcatttcatatttataagctactttgaccactaattttaccaaacact 253  Q
    ||||||||||||||||||| |||||| |||||  ||| || |||||||||||||||    
T  20873134 tttttatgtcatttcatatgtataagttacttcaaccgctgattttaccaaacact 20873079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 257
Target Start/End: Original strand, 42218283 - 42218341
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttcaa 257  Q
    ||||||||||||| | |||||| ||||| ||  ||| ||||||||||||||||||||||    
T  42218283 ttttatgtcattttacatttatcagctagttcaaccgctaattttaccaaacacttcaa 42218341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 257
Target Start/End: Original strand, 43861407 - 43861465
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttcaa 257  Q
    ||||||||||||| ||| |||| ||||||||  ||  ||||||||||||||||||||||    
T  43861407 ttttatgtcatttaatacttatcagctacttcaacatctaattttaccaaacacttcaa 43861465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 252
Target Start/End: Original strand, 11042063 - 11042108
Alignment:
Q  207 catttcatatttataagctactttgaccactaattttaccaaacac 252  Q
    ||||||||||||||||| || ||  |||||||||||||||||||||    
T  11042063 catttcatatttataagttagttcaaccactaattttaccaaacac 11042108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 226
Target Start/End: Original strand, 38053580 - 38053609
Alignment:
Q  197 ttttttatgtcatttcatatttataagcta 226  Q
    ||||||||||||||||||||||||||||||    
T  38053580 ttttttatgtcatttcatatttataagcta 38053609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 252
Target Start/End: Complemental strand, 41991053 - 41991000
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacac 252  Q
    ||||||||||||| |||||||| ||| ||||| ||  |||||||||||||||||    
T  41991053 ttttatgtcattttatatttatcagcaactttaacagctaattttaccaaacac 41991000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 46972717 - 46972774
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttca 256  Q
    ||||||||||||| |  ||||||||||| ||  ||| |||||||||||||||||||||    
T  46972717 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacacttca 46972774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 52165559 - 52165502
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttca 256  Q
    ||||||||||||| |  ||||||||||| ||  ||| |||||||||||||||||||||    
T  52165559 ttttatgtcattttacgtttataagctagttgaaccgctaattttaccaaacacttca 52165502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 37528208 - 37528152
Alignment:
Q  200 tttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttca 256  Q
    |||||||||||| | |||||| ||||| ||  ||||||| |||||||||||||||||    
T  37528208 tttatgtcattttacatttatcagctagttgaaccactatttttaccaaacacttca 37528152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 39720083 - 39720139
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttc 255  Q
    ||||||||||||| |||||||| ||||| ||  ||| ||| ||||||||||||||||    
T  39720083 ttttatgtcattttatatttatcagctagttgaaccgctagttttaccaaacacttc 39720139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 23908892 - 23908839
Alignment:
Q  198 tttttatgtcatttcatatttataagctactttgaccactaattttaccaaaca 251  Q
    ||||||||||||||||||||||||||||| ||  ||||||||||| ||||||||    
T  23908892 tttttatgtcatttcatatttataagctagttcaaccactaatttcaccaaaca 23908839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 130 - 253
Target Start/End: Complemental strand, 31117737 - 31117613
Alignment:
Q  130 tatcactttttacctcaattttaccccaaaaattttaattgaa-aaaataagtagcaattaaata-ccattttttatgtcatttcatatttataagctac 227  Q
    ||||| |||||| |||||||||||||| | ||| ||||||||| ||||||| ||  |||||||||  |||||||| |||||||||||||||||| ||||     
T  31117737 tatcaatttttatctcaattttacccctacaatcttaattgaaaaaaataaatattaattaaatatacatttttt-tgtcatttcatatttatatgctat 31117639  T
Q  228 tttgaccactaattttaccaaacact 253  Q
    ||  | | ||||||||| ||||||||    
T  31117638 ttcaatcgctaattttatcaaacact 31117613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 9422551 - 9422496
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacactt 254  Q
    ||||||||||||| |||||||| |||||||| ||| ||||| ||||||||||||||    
T  9422551 ttttatgtcattttatatttatcagctacttcgacaactaactttaccaaacactt 9422496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 197 - 252
Target Start/End: Complemental strand, 21516579 - 21516524
Alignment:
Q  197 ttttttatgtcatttcatatttataagctactttgaccactaattttaccaaacac 252  Q
    |||| |||||||||||||||||| |||||| ||  |||||||||||||||||||||    
T  21516579 ttttctatgtcatttcatatttaaaagctatttcaaccactaattttaccaaacac 21516524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 34319216 - 34319275
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttcaac 258  Q
    ||||||||||||| | ||||||||| || ||  |||||||||||||||||||||||||||    
T  34319216 ttttatgtcattttacatttataagttagttgaaccactaattttaccaaacacttcaac 34319275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 198 - 253
Target Start/End: Original strand, 35058682 - 35058737
Alignment:
Q  198 tttttatgtcatttcatatttataagctactttgaccactaattttaccaaacact 253  Q
    |||||||||||||||||||||||||| || ||  ||| ||||||||||||||||||    
T  35058682 tttttatgtcatttcatatttataaggtagttcaaccgctaattttaccaaacact 35058737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 30173468 - 30173415
Alignment:
Q  198 tttttatgtcatttcatatttataagctactttgaccactaattttaccaaaca 251  Q
    ||||||||||||||||||||||||| ||||||  ||| ||||||||| ||||||    
T  30173468 tttttatgtcatttcatatttataaactacttcaaccgctaattttaacaaaca 30173415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 204 - 253
Target Start/End: Complemental strand, 35926583 - 35926534
Alignment:
Q  204 tgtcatttcatatttataagctactttgaccactaattttaccaaacact 253  Q
    |||||||||||| |||||||||| ||  ||||||||||||||||||||||    
T  35926583 tgtcatttcatacttataagctagttcaaccactaattttaccaaacact 35926534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 1415881 - 1415933
Alignment:
Q  197 ttttttatgtcatttcatatttataagctactttgaccactaattttaccaaa 249  Q
    ||||||||||||||||| |||||||||||| ||| ||| ||||||||| ||||    
T  1415881 ttttttatgtcatttcacatttataagctagtttaaccgctaattttatcaaa 1415933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 1714109 - 1714053
Alignment:
Q  197 ttttttatgtcatttcatatttataagctactttgaccactaattttaccaaacact 253  Q
    |||||||||||||||||||||||||| ||||||  ||   |||||||||||||||||    
T  1714109 ttttttatgtcatttcatatttataaactacttcaacggttaattttaccaaacact 1714053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 22593651 - 22593549
Alignment:
Q  127 gcttatcactttttacctcaattttaccccaaaaattttaattgaaaaaa--taagtagcaattaaatacc-attttttatgtcatttcatatttataag 223  Q
    |||||||| |||||| |  ||||||||||||  ||| ||||||||| |||  ||| ||  |||||||||   ||||||||||||||||||||||||||||    
T  22593651 gcttatcattttttatcctaattttaccccactaatcttaattgaagaaaattaaatattaattaaatatatattttttatgtcatttcatatttataag 22593552  T
Q  224 cta 226  Q
    |||    
T  22593551 cta 22593549  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 253
Target Start/End: Original strand, 32602949 - 32602992
Alignment:
Q  210 ttcatatttataagctactttgaccactaattttaccaaacact 253  Q
    ||||||||||||||||||||  |||||||||||||| |||||||    
T  32602949 ttcatatttataagctacttcaaccactaattttactaaacact 32602992  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 10518352 - 10518410
Alignment:
Q  171 aaaaaataagtagcaattaaataccattttttatgtcatttcatatttataagctactt 229  Q
    ||||||||| ||  |||||||||  ||||||||||| |||||||||||||||| |||||    
T  10518352 aaaaaataaatattaattaaatataattttttatgttatttcatatttataagttactt 10518410  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 3949708 - 3949652
Alignment:
Q  197 ttttttatgtcatttcatatttataagctactttgaccactaattttaccaaacact 253  Q
    ||||||||||||||||||||||||||  || ||  | | ||||||||||||||||||    
T  3949708 ttttttatgtcatttcatatttataaattagttcaaacgctaattttaccaaacact 3949652  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 11624438 - 11624486
Alignment:
Q  197 ttttttatgtcatttcatatttataagctactttgaccactaattttac 245  Q
    |||||||||| ||||||||||||| | ||| ||| ||||||||||||||    
T  11624438 ttttttatgttatttcatatttatcaactaatttaaccactaattttac 11624486  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 256
Target Start/End: Original strand, 40888500 - 40888556
Alignment:
Q  200 tttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttca 256  Q
    |||||||||||| | |||||||||||| ||  ||| ||| |||||||||||||||||    
T  40888500 tttatgtcattttacatttataagctagttgaaccgctatttttaccaaacacttca 40888556  T

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Target: scaffold0010 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 166740 - 166791
Alignment:
Q  202 tatgtcatttcatatttataagctactttgaccactaattttaccaaacact 253  Q
    ||||||||||||||||||||||||| ||  ||| ||||||||||||||||||    
T  166740 tatgtcatttcatatttataagctagttcaaccgctaattttaccaaacact 166791  T

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Target: scaffold0349 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 9533 - 9476
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttca 256  Q
    ||||||||||||| | |||||||||||| ||  ||| |||||||||||||||||||||    
T  9533 ttttatgtcattttacatttataagctagttgaaccgctaattttaccaaacacttca 9476  T

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Target: scaffold0040 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 249
Target Start/End: Complemental strand, 49911 - 49787
Alignment:
Q  127 gcttatcactttttacctcaattttaccccaaaaattttaattg-aaaaaataagtagcaattaaatac-cattttttatgtcatttcatatttataagc 224  Q
    ||||||||||||||| |||||||||||||    ||| ||||||| ||||||||| || ||||||||  |  |||||| |||||||||||||||||| | |    
T  49911 gcttatcactttttatctcaattttacccttgcaatcttaattgaaaaaaataaatatcaattaaaagcaaatttttcatgtcatttcatatttatcaac 49812  T
Q  225 tactttgaccactaattttaccaaa 249  Q
    ||  |   |||||||||||||||||    
T  49811 taagtcagccactaattttaccaaa 49787  T

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Target: scaffold0330 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 7704 - 7757
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacac 252  Q
    ||||||||||||| ||| |||| ||||||||  || ||||||||||||||||||    
T  7704 ttttatgtcattttatacttatcagctacttcaacaactaattttaccaaacac 7757  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 259
Target Start/End: Original strand, 192721 - 192781
Alignment:
Q  199 ttttatgtcatttcatatttataagctactttgaccactaattttaccaaacacttcaacc 259  Q
    ||||||||||||| | |||||| ||||| ||  ||| ||||||||||||||||||| ||||    
T  192721 ttttatgtcattttacatttatcagctagttgaaccgctaattttaccaaacactttaacc 192781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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