View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8228_low_8 (Length: 484)
Name: NF8228_low_8
Description: NF8228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8228_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 3 - 352
Target Start/End: Original strand, 8256027 - 8256376
Alignment:
| Q |
3 |
ttttgaaggaagatagattaatagtatatgactcctttttcttccctattctaattagaattttattatttgtctgtgcattgacaaacaaatagtaatg |
102 |
Q |
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| T |
8256027 |
ttttgaaggaagatagattaatagtatatgactcctttttcttccctattctaattagaatttgattatttgtctgtgcattgacaaacaaatagtaatg |
8256126 |
T |
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| Q |
103 |
taagtctatggttttatttccgcccacaaatttacgtaagcgaacgacttataacgtatggtactcaaaactcaaaagaaagaccaaaattaagatgtca |
202 |
Q |
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| T |
8256127 |
taagtctatggttttatttccgcccacaaatttacgtaagcgaacgacttataacgtatggtactcaaaactcaaaagaaagaccaaaattaagatgtca |
8256226 |
T |
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| Q |
203 |
tcaaagacaattagtaacatagaaattaaaggattgttgacagtgtatannnnnnnatcaatatttaattttcatgcaagaatgaatgatgttttgataa |
302 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8256227 |
tcaaagacaattagtgacatagaaattaaaggattgttgacagtttatatttttttatcaatatttaattttcatgcaagaatgaatgatgtcttgataa |
8256326 |
T |
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| Q |
303 |
gtaaaaagttag-tcactcatgtcggtgaacgattattcgtcgctttctat |
352 |
Q |
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| T |
8256327 |
gt-aaaagttagttcactcatgacggtgaacgattattcgtcgctttctat |
8256376 |
T |
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