View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8229_high_1 (Length: 502)
Name: NF8229_high_1
Description: NF8229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8229_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 434; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Original strand, 34441355 - 34441847
Alignment:
| Q |
1 |
ccaagtgaatctcaagatttctcttcaaggatatgtgagcaaaaacttagctgggtcaacaaagaccgttctcgcgtctcaaaatatacttgatgagaat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34441355 |
ccaagtgaatctcaagatttctcttcaaggatatgtgagcaaaaacctagctgggtcaacaaagaccgttctcgcgtctcaaaatatacttgatgagaat |
34441454 |
T |
|
| Q |
101 |
agcttcacagaaccaaaaaaggttcatatatttcctttgttataaatttgttacaaaaataaaaagaccagtgcatggatctaatatctagttatgtttg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34441455 |
agcttcacagaaccaaaaaaggttcatatatttcctttgttataaatttgttacaaaaataaaaagaccagtgcatggatctaatatctagtta--tttg |
34441552 |
T |
|
| Q |
201 |
tttatgtatgcagatagcaccacaaacaagtccacttcagaatcctggcaatgagatgaatgtcataatccctccaatttcattaacagtacttgatatc |
300 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34441553 |
tttatgtatgcagatagcaccacaacaaagtccacttcagaatcctggcaatgagatgaatgtcataatccctccaatttcattaacagtacttgatatc |
34441652 |
T |
|
| Q |
301 |
ttttaataatgatgatacccttgagatataaataagcagatcagaatataagggttgagtttgttggagtaatattctcatagtttgttattgtaatcta |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34441653 |
ttttaataatgatgatacccttgagatataaataagcag---agaatataagggttgagttttttggagtaatattctcatagtttgttattgtaatcta |
34441749 |
T |
|
| Q |
401 |
tt------ttcaaattcaaattgtaaatcctaatccaatatgtttactgtaacaaaccgtagattttatctaaacttttgtaatctatatgttgatgt |
492 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34441750 |
ttttcaaattcaaattcaaattgtaaatcctaatccaatatgtttactgtaacaaaccgtagattttatctaaacttttgtaatctatatgttgatgt |
34441847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 4 - 291
Target Start/End: Original strand, 34467089 - 34467380
Alignment:
| Q |
4 |
agtgaatctcaagatttctcttcaaggatatgtgagcaaaaacttagctgggtcaacaaagaccgttctcgcgtctcaaaatatacttgatgagaatagc |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||| |||||||||||||||||||| | |
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| T |
34467089 |
agtgaatctcaagatttctcttcaaggatatgtgagcaaaaacctagctgggtcaacgaagaccgttctcacgtctggaaatatacttgatgagaatacc |
34467188 |
T |
|
| Q |
104 |
ttcacagaaccaaaaaaggtt----catatatttcctttgttataaatttgttacaaaaataaaaagaccagtgcatggatctaatatctagttatgttt |
199 |
Q |
| |
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||| ||| ||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||| |||||||||| |
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| T |
34467189 |
ttcgcagcaccaaaaaaggttaatatatatatttcctttgttataaatttgttacataaatagaaagactggtgcatggatctaatatcaagttatgttt |
34467288 |
T |
|
| Q |
200 |
gtttatgtatgcagatagcaccacaaacaagtccacttcagaatcctggcaatgagatgaatgtcataatccctccaatttcattaacagta |
291 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
34467289 |
gtttatgtatgcagatagcaccacaaacaagtccacttcagaatcctggcaatgagatgaatgtcatgatccctccagtttcattaacagta |
34467380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 34451164 - 34451464
Alignment:
| Q |
1 |
ccaagtgaatctcaagatttctcttcaaggatatgtgagcaaaaacttagctgggtcaacaaagaccgttctcgcgtctcaaaatatacttgatgagaat |
100 |
Q |
| |
|
||||||| || ||||||||||| |||| |||| || |||||||||| || |||||||||||||| |||||| | | |||| ||||||||||||| |
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| T |
34451164 |
ccaagtggatttcaagatttctattcagggatttgcgagcaaaaacctaaaagggtcaacaaagactgttctcac---tggaaatgaacttgatgagaat |
34451260 |
T |
|
| Q |
101 |
agcttcacagaaccaaaaaaggttcatatatttcctttgttataaatttgttacaaaaataaaaagaccagtgcatggatctaatatctagttatgtttg |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| || |||||||||||||||| ||||||||||| |
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| T |
34451261 |
agcttcgcagaaccaaaaaaggttcatatatttcctctgttatatatttgttacaaaaataaaaagactagcgcatggatctaatatcaagttatgtttg |
34451360 |
T |
|
| Q |
201 |
tttatgtatgcagatagcaccacaaacaagtccacttcagaatcctggcaatgagatgaatgtcataatccctccaatttcattaacagtacttgatatc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| |||||||||| |
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| T |
34451361 |
tttatgtatgcagatagcaccacaaacaagtccacttcagaatcctggcaatgagatgaatgtcatagtccaaccaacgtcattaacaatacttgatatg |
34451460 |
T |
|
| Q |
301 |
tttt |
304 |
Q |
| |
|
|||| |
|
|
| T |
34451461 |
tttt |
34451464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 348 - 423
Target Start/End: Original strand, 34451538 - 34451613
Alignment:
| Q |
348 |
ataagggttgagtttgttggagtaatattctcatagtttgttattgtaatctattttcaaattcaaattgtaaatc |
423 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||| |
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|
| T |
34451538 |
ataagggttgaatctgttggagtaatattctcatagtttgttaccttactctgttttcaaattcaaattgtaaatc |
34451613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 362 - 476
Target Start/End: Complemental strand, 334628 - 334513
Alignment:
| Q |
362 |
tgttggagtaatattctcata-gtttgttattgtaatctattttcaaattcaaattgtaaatcctaatccaatatgtttactgtaacaaaccgtagattt |
460 |
Q |
| |
|
|||||||||| |||||||||| | | | | ||||| ||||||| |||||||||||||||||||||||| || |||||| |||||||||| ||||| | |
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|
| T |
334628 |
tgttggagtagtattctcataagctggatgttgtattctatttctaaattcaaattgtaaatcctaatctaagatgtttgttgtaacaaactctagatat |
334529 |
T |
|
| Q |
461 |
tatctaaacttttgta |
476 |
Q |
| |
|
| ||| ||| |||||| |
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|
| T |
334528 |
tctctcaacctttgta |
334513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 361 - 457
Target Start/End: Complemental strand, 17881674 - 17881572
Alignment:
| Q |
361 |
ttgttggagtaatattctcatagtttgttattgtaatcta-------ttttcaaattcaaattgtaaatcctaatccaatatgtttactgtaacaaaccg |
453 |
Q |
| |
|
|||||| | |||||| |||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||| ||||| |||||||||| | |
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|
| T |
17881674 |
ttgttgaactaatatcctcatagtttgttattgtaatctatttttaatttttaaattcaaattgtaaa-cctaatccaatgtgtttcgtgtaacaaactg |
17881576 |
T |
|
| Q |
454 |
taga |
457 |
Q |
| |
|
|||| |
|
|
| T |
17881575 |
taga |
17881572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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