View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8229_low_2 (Length: 281)
Name: NF8229_low_2
Description: NF8229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8229_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 273
Target Start/End: Complemental strand, 55649782 - 55649526
Alignment:
| Q |
14 |
cagtgtgaggaagtttaaagttaactctcttcttcttctgtgatttaccaaataagttatttgtaattaacgaacaatttgatgttaatccttcgtcagc |
113 |
Q |
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| T |
55649782 |
cagtgtgaggaagtttaaagttaactctcttcttct---gtgatttaccaaataagttatttgtaattaacgaacaatttgatgttaatccttcgtcagc |
55649686 |
T |
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| Q |
114 |
aagttcttctttttcacgacagttcttggttttttccaataagcataaactatcttgagttaattcacttattaaagatccaccacggaaacgtgttgaa |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
55649685 |
aagttcttctttttcacgacagttcttggttttttccaataagcataaactatcttgagctaattcacttattaaagatccaccacagaaacgtgttgaa |
55649586 |
T |
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| Q |
214 |
caaggatgcactcttttcctcgactgtttcaattctggaaaagctaatatccattcttct |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
55649585 |
caaggatgcactcttttcctcgactgtttcaattctggaaaagataatatccattcttct |
55649526 |
T |
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