View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8229_low_4 (Length: 240)
Name: NF8229_low_4
Description: NF8229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8229_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 6656603 - 6656838
Alignment:
| Q |
1 |
gaacctatattcaaataaataaaaatgtatacaaacgagnnnnnnnnntcatctaaaggttacccatacatagttcctattttatttgctggacatattc |
100 |
Q |
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| T |
6656603 |
gaacctatattcaaataaataaaaatgtatacaaacgagaaaaaaaa-tcatctaaaggttaaccatacatagttcctattttatttgttggacatattc |
6656701 |
T |
|
| Q |
101 |
aaactctagttatattggttcaacaaatcggatcgagttttactcaaccacaaacaatgataatagcg--------gtagcagtcaaat----aaaaaat |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||| |
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| T |
6656702 |
aaactctagttatattggttcaacaaatcggatcgagttttactcaaccataaacaatgataatagcggtagcactgtagcagtcaaataaaaaaaaaaa |
6656801 |
T |
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| Q |
189 |
aaaatctgattttctgagagtttcttctcaacaatgt |
225 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||| |
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| T |
6656802 |
aaaaactgattttctgagagtttcttctcaacaatgt |
6656838 |
T |
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