View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8230_high_1 (Length: 430)
Name: NF8230_high_1
Description: NF8230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8230_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 14089497 - 14089676
Alignment:
| Q |
15 |
attacaatttgagagaggcttcttttggttcttctcgtgaagtaatggttcacagtctactatagcctttgtttc--aattattcaaaaacaaagcttcc |
112 |
Q |
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| T |
14089497 |
attacaatttgagagagggttcttttggttcttctcgtgaagtaatggttcacagtctactatagcctttgtttctcaattattcaaaaacaaagcttcc |
14089596 |
T |
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| Q |
113 |
acgccaaagtttcttttaaattgtaggaattagatcattgtgcacatcatactatgattctaagtttccgaccttctcaa |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14089597 |
acgccaaagtttcttttaaattgtaggaattagatcattgtgcacatcatactatgattctaagtttccgaccttctcaa |
14089676 |
T |
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