View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8230_high_3 (Length: 379)
Name: NF8230_high_3
Description: NF8230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8230_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 374
Target Start/End: Complemental strand, 2179792 - 2179435
Alignment:
| Q |
19 |
atagccacttcaacaactgtgaacactttctctaatattcctttcatgggatttgtcagtctaccttgcacaataaaaatgtaagagagaattgtgttac |
118 |
Q |
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| T |
2179792 |
atagccacttcaacaactgtgaacactttctctaatattcctttcatgggatttgtcagtttaccttgcacaataaaaatgtaagagagaattgtgttac |
2179693 |
T |
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| Q |
119 |
tgccatttagtactatttttctgaagnnnnnnnn-gagagatattttgagtagatgcattgtctcatcctcctcaaattagagtaatttagttacttagg |
217 |
Q |
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| T |
2179692 |
tgccatttagtactatttttctgaagaaaaaaaaagagagatattttgagtagatgcattgtctcatcctcctcaaattagagtaatttagttacttagg |
2179593 |
T |
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| Q |
218 |
ttttaatattcacttctaggacttaagagtatttttatgaatgaat-tatgttgtgttttgacagtgtaatagcaggtagcagctcaagttggaaaacta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2179592 |
ttttaatattcacttctaggacttaagagtatttttatgaatgaatatatgttgtgttttgacagtgtaatagcaggtagcagctcaagttggaaaacta |
2179493 |
T |
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| Q |
317 |
gctaaatgttgttgcgatgctacaacatctgagcgcatctgaagttgaacaccaaact |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2179492 |
gctaaatgttgttgcgatgctacaacatctgagcgcatctgaagttgaacacaaaact |
2179435 |
T |
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