View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8230_high_7 (Length: 314)
Name: NF8230_high_7
Description: NF8230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8230_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 304
Target Start/End: Complemental strand, 6862677 - 6862392
Alignment:
| Q |
19 |
acacataaacacatgatttgataccaataattatgaatcttgcaatgaacatttagaggtttcaaaatggcaacgtatgtcaatctggcacactaatatt |
118 |
Q |
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| T |
6862677 |
acacataaacacatgatttgataccaataattatgaatcttgcaatgaacatttagaggtttcaaaatggcaacgtatatcaatctggcacactaatatt |
6862578 |
T |
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| Q |
119 |
taagtgcagcatactatataatagtatcaatttaaagagagaaaattataagcaaatgtgctaatgacaccacataaacaaccattatctcctttacttt |
218 |
Q |
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| T |
6862577 |
taagtgcagcatactatataatagtatcaatttaaagagagaaaattataagcaaatgtgctaatgacaccacataaacaaccattatctcctttacttt |
6862478 |
T |
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| Q |
219 |
acagtcacaagtctgtttttaatgtgataccaagcgtcggcatatcctaaggtatatatttcaacccaaaatcaaacccttctctg |
304 |
Q |
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| T |
6862477 |
acagtcacaagtctgtttttaatgtaataccaagcgtcggcatatcctaaggtacatatttcaacccaaaatcaaacccttctctg |
6862392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 166 - 267
Target Start/End: Complemental strand, 6857605 - 6857503
Alignment:
| Q |
166 |
ataagcaaatgtgctaatgacaccacataaacaaccattatctcctttactttacagtcacaagtctgtttt-taatgtgataccaagcgtcggcatatc |
264 |
Q |
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| T |
6857605 |
ataagcaaatgtgctaatgacaccacataaaaaactattatcaccatcactttaccgtcactaatctgttttctaatgtgataccaaccgtcggcgtatc |
6857506 |
T |
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| Q |
265 |
cta |
267 |
Q |
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| T |
6857505 |
cta |
6857503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 6857768 - 6857700
Alignment:
| Q |
23 |
ataaacacatgatttgataccaataattatgaatcttgcaat-gaacatttagaggtttcaaaatggca |
90 |
Q |
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| T |
6857768 |
ataaacacatgatatgaaaccaataattatgaattttgtagtaaaacatttgaaggtttcaaaatggca |
6857700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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