View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8230_high_9 (Length: 242)
Name: NF8230_high_9
Description: NF8230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8230_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 45691546 - 45691322
Alignment:
| Q |
1 |
ttgtttatcccaaccctattaacaatttgaaagattttttcacttcttttgtctccagctgtaggacgtgtaaacaagatggtatccaagtggtgacatg |
100 |
Q |
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| T |
45691546 |
ttgtttatcccaaccctattaacaatttgaaagactttttcacttcttttgtctccagctgtaggacgtgtaaacaagatggtatccaagtggtgacatg |
45691447 |
T |
|
| Q |
101 |
gataggaaagtgagtttcctcctatttatttaaccagcatggtacaaaaacaattcagcataataatgcatcctctaactggaattaattaacgtctcag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45691446 |
gataggaaagtgagtttcctcctatttatttaaccagcatggtacaaaaacaattcagcataataatgcatcctctaactggaattaattaacgtctcaa |
45691347 |
T |
|
| Q |
201 |
tgggtttagggttgtgattattgat |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
45691346 |
tgggtttagggttgtgattattgat |
45691322 |
T |
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