View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8230_low_10 (Length: 345)
Name: NF8230_low_10
Description: NF8230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8230_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 162 - 321
Target Start/End: Complemental strand, 31565451 - 31565292
Alignment:
| Q |
162 |
ttggcgtctaatcaacatttggttattatgatttctgttttcaaaattgatctcactctgttgtatacttcttcctatgaaaatgcaacaaatacttttc |
261 |
Q |
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| T |
31565451 |
ttggcgtctaatcaacatttggttattatgatttctgttttcaaaattgatctcactctgttgtatacttcttcctatgaaaatgcaacaaatacttttc |
31565352 |
T |
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| Q |
262 |
ttgaaaactttttaagctataattgtttctccaagagtgaaccgaacaaaacgccgcaca |
321 |
Q |
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| T |
31565351 |
ttgaaaactttttaagctataattgtttctccaagagtgaaccgaacaaaacgccgcaca |
31565292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 31565556 - 31565454
Alignment:
| Q |
18 |
taatcaaagagtgtctatccttgaatagatcaatgattgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaattc |
117 |
Q |
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| T |
31565556 |
taatcaaagagtggctatccttgaatagatcaatgattgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaattc |
31565457 |
T |
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| Q |
118 |
aga |
120 |
Q |
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||| |
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| T |
31565456 |
aga |
31565454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 33413915 - 33414021
Alignment:
| Q |
17 |
ataatcaaagagtgtctatccttgaatagatcaatgattgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaatt |
116 |
Q |
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| T |
33413915 |
ataagcaaagagtgcctatcttcaaacagatcaatgattaatgattattatcatttacatgataagtaacaaatgtcaagaattaatgaaacaaacaatt |
33414014 |
T |
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| Q |
117 |
cagacct |
123 |
Q |
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|| |||| |
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| T |
33414015 |
caaacct |
33414021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 269
Target Start/End: Original strand, 33414090 - 33414254
Alignment:
| Q |
113 |
aattcagacctcatctatcctcgatagagatacatatcagtaaaatgtattggcgtctaatcaacatttggttattatga---------tttctgttttc |
203 |
Q |
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||||||| |||||| ||||||| ||| ||||||| |||||||||| || | ||| |||||||||||||||||||||||| ||||||||| | |
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| T |
33414090 |
aattcagtcctcatgtatcctcaatacagatacagatcagtaaaacgtgtccgcgcctaatcaacatttggttattatgaagaagcagatttctgttt-c |
33414188 |
T |
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| Q |
204 |
aaaattgatctcactctgttgtatacttcttcctatgaaaatgcaacaaatacttttcttgaaaac |
269 |
Q |
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| T |
33414189 |
aaaattggtctcactctgccgcatacttcttcctatgaaaatgcaacgattacttctcttgaaaac |
33414254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 33351038 - 33351120
Alignment:
| Q |
41 |
aatagatcaatgattgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaattcagacct |
123 |
Q |
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||||||||||||||| |||||||||||| |||||| || |||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
33351038 |
aatagatcaatgattaatgattattatcctttacaatagtagtaacaaatgtcaagaattaatgaaacaaacaattcaaacct |
33351120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 143 - 281
Target Start/End: Original strand, 33351212 - 33351363
Alignment:
| Q |
143 |
tacatatcagtaaaatgtattggcgtctaatcaacatttggttattatga---------tttctgttttcaaaa-ttgatctcactctgttgtatacttc |
232 |
Q |
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|||| ||||||||||||| | ||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||| | | ||||||| |
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| T |
33351212 |
tacagatcagtaaaatgtgtccgcgcctaatcaacatttggttattatgaagaacaagatttctgttttcaaaaattgatctcactccgcagcatacttc |
33351311 |
T |
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| Q |
233 |
ttcctatgaaaatgca---acaaatacttttcttgaaaactttttaagctat |
281 |
Q |
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|||||||||||||||| |||||||||| |||||||| | || |||||||| |
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| T |
33351312 |
ttcctatgaaaatgcaaagacaaatacttgtcttgaaagcgttgtaagctat |
33351363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 320
Target Start/End: Original strand, 33414293 - 33414328
Alignment:
| Q |
285 |
tgtttctccaagagtgaaccgaacaaaacgccgcac |
320 |
Q |
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| T |
33414293 |
tgtttctccgagagtgaaccgaacaaaacgccgcac |
33414328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 191 - 267
Target Start/End: Complemental strand, 17446026 - 17445951
Alignment:
| Q |
191 |
gatttctgttttcaaaattgatctcactctgttgtatacttcttcctatgaaaatgcaacaaatacttttcttgaaa |
267 |
Q |
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| T |
17446026 |
gatttctgttt-caaaattgatctcactctgccgcatacttcttcctatgaaaatgcaacaaatacttgtcttgaaa |
17445951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 17446233 - 17446159
Alignment:
| Q |
49 |
aatgattgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaattcagacct |
123 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| | |||| ||||| |||||||||||||| |||| |
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| T |
17446233 |
aatgattaatgattattatcatttacatgagaagtaacaaatatcaagagttaatcaaacaaacaattcaaacct |
17446159 |
T |
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