View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8230_low_12 (Length: 285)
Name: NF8230_low_12
Description: NF8230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8230_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 16 - 269
Target Start/End: Complemental strand, 26494335 - 26494091
Alignment:
| Q |
16 |
aaacaaaagaatcacgatgagagaaaggttaagagacggttaagtaagagggagcaaagcttagtatatataatgagtaaatatgtttttaatcctaaca |
115 |
Q |
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| T |
26494335 |
aaacaaaagaatcacgatgagagaaaggttaagagacggttaagtaagaggcagcaaa--------tatataatgagtaaatatgtttttaatcctaata |
26494244 |
T |
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| Q |
116 |
gaatactcttctatcaagttttatcactacnnnnnnnnttactcgtgtttagtcttcatttggtgatttcaaggactaaatacagcagaaaattttcatc |
215 |
Q |
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| T |
26494243 |
gaatactcttctatcaagttttatcactacaaaaaaa-ttatccgtgtttagtcttcatttggtgatttcaaggactaaatacagcagaaaattttcatc |
26494145 |
T |
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| Q |
216 |
agagtcaccaaatgggggactaaacatgtatggaatttttgtagagactaaact |
269 |
Q |
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| T |
26494144 |
agagtcaccaaataggggactaaacatgtatggaatttttgtagagactaaact |
26494091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 60 - 269
Target Start/End: Complemental strand, 19081275 - 19081063
Alignment:
| Q |
60 |
taagagggagcaaagcttagtatatataatgagt-aaatatgtttttaatcctaacagaatactcttctatcaagttttatcactacnnnnnnnn----t |
154 |
Q |
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| T |
19081275 |
taagaggcaacaaagcttagtatata--atgagttaaatatgtttttaatcctaataaaatactcttctatcaagtttgatcactacaaaaaaaaaatat |
19081178 |
T |
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| Q |
155 |
tactcgtgtttagtcttcatttggtgatttcaaggactaaatacagcagaaaattttcatcagagtcaccaaatgggggactaaacatgtatggaatttt |
254 |
Q |
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| T |
19081177 |
catttatgtttagtcttcatttggtgatttcaagggctggatacagatgaaaactttcaccagaatcaccaaatgggggactaaacatgtatggaatttt |
19081078 |
T |
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| Q |
255 |
tgtagagactaaact |
269 |
Q |
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| T |
19081077 |
tgtagagactaaact |
19081063 |
T |
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