View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8230_low_17 (Length: 237)
Name: NF8230_low_17
Description: NF8230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8230_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 11849271 - 11849478
Alignment:
| Q |
16 |
atcgtttcgcggagatgtggttgttaaaaccggtggaaatcctgatattggaaaggacaaacctcctggctcgcccggctctagttctggaggtgaatat |
115 |
Q |
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| T |
11849271 |
atcgtttcgcggagatgtggttgttaaaaccggtggaaatcctgatattggaaaggacaaacctcctggctcgcccggctctagttctggaggtgaatat |
11849370 |
T |
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| Q |
116 |
aagaagaaaattagtgttggagcaattgttgggattgtgatggggattgtttgtttacttggtgtagtaggggttttggtatttgttatgcgcggtagaa |
215 |
Q |
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| T |
11849371 |
aagaagaaaattagtgttggagcaattgttgggattgtgatggggattgtttgtttacttggtgtagtaggggttttggtatttgttatgcgcggtagaa |
11849470 |
T |
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| Q |
216 |
gacataat |
223 |
Q |
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|||||||| |
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| T |
11849471 |
gacataat |
11849478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 11835894 - 11836050
Alignment:
| Q |
19 |
gtttcgcggagatgtggttgttaaaaccggtggaaatcctgatattggaaaggacaaacctcctggctcgccc---------ggctctagttctggaggt |
109 |
Q |
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| T |
11835894 |
gtttcgcggagatgttgttgttaaaaccagtggaaatcctgatattggaaaagataaacctcatgactcgcccaacagccctggctctacttctggaggt |
11835993 |
T |
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| Q |
110 |
gaatataagaagaaaattagtgttggagcaattgttgggattgtgatggggattgtt |
166 |
Q |
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| T |
11835994 |
aaagataagaagaaagttagtgttggagtcattgtggggattgtgatgggaattgtt |
11836050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 11857875 - 11857715
Alignment:
| Q |
17 |
tcgtttcgcggagatgtggttgttaaaaccggtggaaatcctgatattggaaaggacaaacctcctggctcgc---------------------ccggct |
95 |
Q |
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| T |
11857875 |
tcgtttcgcggcgatgtggttgttaaaacaggtggaaatcctgatattggaaaggataaacctcatgactcgcctgacagccccaaatctagttccgact |
11857776 |
T |
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| Q |
96 |
ctagttctggaggtgaatataagaagaaaattagtgttggagcaattgttgggattgtgat |
156 |
Q |
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| T |
11857775 |
ctagttctggaggtgaagataagaagaaattgagtgttggagcaattgttgggattgtgat |
11857715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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