View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8230_low_18 (Length: 234)

Name: NF8230_low_18
Description: NF8230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8230_low_18
NF8230_low_18
[»] chr1 (15 HSPs)
chr1 (1-216)||(13244506-13244721)
chr1 (8-210)||(13080856-13081058)
chr1 (1-201)||(12963875-12964075)
chr1 (1-189)||(30368120-30368308)
chr1 (1-183)||(13271578-13271760)
chr1 (2-189)||(13129821-13130008)
chr1 (2-189)||(13094392-13094579)
chr1 (1-189)||(13204451-13204639)
chr1 (8-180)||(19279189-19279361)
chr1 (1-189)||(13007192-13007380)
chr1 (1-189)||(13070188-13070376)
chr1 (5-209)||(13086103-13086307)
chr1 (1-189)||(13065225-13065413)
chr1 (1-189)||(13100992-13101180)
chr1 (10-189)||(13161522-13161701)
[»] chr8 (1 HSPs)
chr8 (1-119)||(36668117-36668235)
[»] chr7 (1 HSPs)
chr7 (68-101)||(12164332-12164365)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 13244721 - 13244506
Alignment:
Q  1 attgaatgctatgaacttgtaagacggtacatttataatccctcctctcgctgatatccatctttcaggcttaaattccaagcaatcatctccccatatt 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13244721 attgaaagctatgaacttgtaagacggtacatttataatccctcctctagctgatatccatctttcaggcttaaattccaagcaatcatctccccatatt 13244622  T
Q  101 tgctgcatccttcccattgcatacaaagaatatatcaactttgtatttggaccaacatgttctccactaggtagtatatcagatttgatagcgcacttgt 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13244621 tgttgcatccttcccattgcatacaaagaatatatcaactttgtatttggaccaacatgttctccactaggtagtatatcagatttgatagcgcacttgt 13244522  T
Q  201 gctgaaatgccagagg 216  Q
    ||||||||||||||||    
T  13244521 gctgaaatgccagagg 13244506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 13081058 - 13080856
Alignment:
Q  8 gctatgaacttgtaagacggtacatttataatccctcctctcgctgatatccatctttcaggcttaaattccaagcaatcatctccccatatttgctgca 107  Q
    ||||||||||| |||||||| || | ||||||   ||||||  ||||||||||||| ||||||||||| ||||||||||| |||||||||||||||| ||    
T  13081058 gctatgaacttataagacggcacttgtataatttgtcctctatctgatatccatctctcaggcttaaactccaagcaatcctctccccatatttgctcca 13080959  T
Q  108 tccttcccattgcatacaaagaatatatcaactttgtatttggaccaacatgttctccactaggtagtatatcagatttgatagcgcacttgtgctgaaa 207  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||| ||| |||| ||||||||||| ||||||||||||||    
T  13080958 tccttcccattgcatacaaagaatatattaactttgtatttggactaacatggtctccactaggaagtttatccgatttgatagcacacttgtgctgaaa 13080859  T
Q  208 tgc 210  Q
    |||    
T  13080858 tgc 13080856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 12964075 - 12963875
Alignment:
Q  1 attgaatgctatgaacttgtaagacggtacatttataatccctcctctcgctgatatccatctttcaggcttaaattccaagcaatcatctccccatatt 100  Q
    |||||||||||||||||| ||||| || || | ||||||  |||||||   |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12964075 attgaatgctatgaacttataagatggcacttgtataatttctcctctatttgatatccatctttcaggcttaaattccaagcaatcttctccccatatt 12963976  T
Q  101 tgctgcatccttcccattgcatacaaagaatatatcaactttgtatttggaccaacatgttctccactaggtagtatatcagatttgatagcgcacttgt 200  Q
    || | ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||| ||||| || || |||||||    
T  12963975 tgttccatccttcccattgcatacaaagaatatatcaactttgtatttggactaacatggtctccactaggtaatatatctgatttaattgcacacttgt 12963876  T
Q  201 g 201  Q
    |    
T  12963875 g 12963875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 30368308 - 30368120
Alignment:
Q  1 attgaatgctatgaacttgtaagacggtacatttataatccctcctctcgctgatatccatctttcaggcttaaattccaagcaatcatctccccatatt 100  Q
    |||||| ||||||||||||||||| ||||||| ||||||   ||||||| |||||| |||||| |||||||||||||||| |||||| ||||||||||||    
T  30368308 attgaaagctatgaacttgtaagatggtacatgtataatgtgtcctctctctgatacccatctctcaggcttaaattccatgcaatcttctccccatatt 30368209  T
Q  101 tgctgcatccttcccattgcatacaaagaatatatcaactttgtatttggaccaacatgttctccactaggtagtatatcagatttgat 189  Q
    |  | |||||||||||| ||||||||||| || || ||||| |||||||||| |||||  |||||||||||||||||||||||||||||    
T  30368208 ttttccatccttcccatagcatacaaagagtaaattaacttggtatttggactaacattctctccactaggtagtatatcagatttgat 30368120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 13271578 - 13271760
Alignment:
Q  1 attgaatgctatgaacttgtaagacggtacatttataatccctcctctcgctgatatccatctttcaggcttaaattccaagcaatcatctccccatatt 100  Q
    |||||||||||||||||||||||| ||||||| ||||||   |||| |  ||||||||||||| ||||||||||| |||||||||||| | |||||||      
T  13271578 attgaatgctatgaacttgtaagatggtacatgtataatttgtcctttatctgatatccatctctcaggcttaaactccaagcaatcaccaccccataca 13271677  T
Q  101 tgctgcatccttcccattgcatacaaagaatatatcaactttgtatttggaccaacatgttctccactaggtagtatatcaga 183  Q
    || | ||| |||||||||||||||||||| ||||| |||||||| |||||||||||||| | |||||||||||||||||||||    
T  13271678 tgttccattcttcccattgcatacaaagagtatattaactttgtgtttggaccaacatggtgtccactaggtagtatatcaga 13271760  T

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Target: chr1; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 2 - 189
Target Start/End: Original strand, 13129821 - 13130008
Alignment:
Q  2 ttgaatgctatgaacttgtaagacggtacatttataatccctcctctcgctgatatccatctttcaggcttaaattccaagcaatcatctccccatattt 101  Q
    ||||| |||| |||||||||||| ||||||| ||||||  |||| ||| | ||||||||||| |||||||||||||||| ||| || |||||||||||||    
T  13129821 ttgaaagctacgaacttgtaagatggtacatgtataatatctcccctctcagatatccatctctcaggcttaaattccatgcagtcttctccccatattt 13129920  T
Q  102 gctgcatccttcccattgcatacaaagaatatatcaactttgtatttggaccaacatgttctccactaggtagtatatcagatttgat 189  Q
    | | |||||||||||| | ||||||||| || |||||  |||||||||||| |||||| | |||||||||||||||||||||||||||    
T  13129921 gttccatccttcccatagaatacaaagagtaaatcaaagttgtatttggactaacatggtatccactaggtagtatatcagatttgat 13130008  T

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Target: chr1; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 2 - 189
Target Start/End: Original strand, 13094392 - 13094579
Alignment:
Q  2 ttgaatgctatgaacttgtaagacggtacatttataatccctcctctcgctgatatccatctttcaggcttaaattccaagcaatcatctccccatattt 101  Q
    ||||| ||||||||||||||||| ||||||| ||||||  |||| ||| | ||||||||||| |||||||||||||||| ||| || |||||||||||||    
T  13094392 ttgaaagctatgaacttgtaagatggtacatgtataatatctcccctctcagatatccatctctcaggcttaaattccatgcagtcttctccccatattt 13094491  T
Q  102 gctgcatccttcccattgcatacaaagaatatatcaactttgtatttggaccaacatgttctccactaggtagtatatcagatttgat 189  Q
    | | |||||||||||| | ||||||||| || || ||  |||||||||||  |||||| | |||||||||||||||||||||||||||    
T  13094492 gttccatccttcccatagaatacaaagagtaaattaaagttgtatttggagtaacatggtatccactaggtagtatatcagatttgat 13094579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 13204451 - 13204639
Alignment:
Q  1 attgaatgctatgaacttgtaagacggtacatttataatccctcctctcgctgatatccatctttcaggcttaaattccaagcaatcatctccccatatt 100  Q
    |||||| ||||||||||||||||| ||||||| ||||||   |||| || |||||| |||||| |||||||||||||||| ||| || ||||||||||||    
T  13204451 attgaaagctatgaacttgtaagatggtacatgtataatgtgtcctgtctctgatacccatctctcaggcttaaattccatgcagtcttctccccatatt 13204550  T
Q  101 tgctgcatccttcccattgcatacaaagaatatatcaactttgtatttggaccaacatgttctccactaggtagtatatcagatttgat 189  Q
    || | |||||||||||| || |||||||| || |  ||| |||||||||||| |||| | |||||||||||||||||||| ||||||||    
T  13204551 tgttccatccttcccatagcgtacaaagagtacaataaccttgtatttggactaacacgctctccactaggtagtatatcggatttgat 13204639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 19279361 - 19279189
Alignment:
Q  8 gctatgaacttgtaagacggtacatttataatccctcctctcgctgatatccatctttcaggcttaaattccaagcaatcatctccccatatttgctgca 107  Q
    |||||||||||||| || ||||||| ||||||   ||||||  | ||||||||||| ||||||  |||||| | ||||||||| ||||||||||| | ||    
T  19279361 gctatgaacttgtacgatggtacatgtataatttgtcctctatccgatatccatctctcaggccgaaattctaggcaatcatcaccccatatttgttcca 19279262  T
Q  108 tccttcccattgcatacaaagaatatatcaactttgtatttggaccaacatgttctccactaggtagtatatc 180  Q
    |||||||||||||||||||||| ||||| |||||||||||| ||| |||||| ||||||||||||||||||||    
T  19279261 tccttcccattgcatacaaagagtatattaactttgtatttagactaacatggtctccactaggtagtatatc 19279189  T

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Target: chr1; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 13007192 - 13007380
Alignment:
Q  1 attgaatgctatgaacttgtaagacggtacatttataatccctcctctcgctgatatccatctttcaggcttaaattccaagcaatcatctccccatatt 100  Q
    |||||| ||||||||||||||||| ||||||| ||||||   ||||||| |||| | |||||| |||||||||||||||| ||| || ||||||||||||    
T  13007192 attgaaagctatgaacttgtaagatggtacatgtataatgtgtcctctctctgacacccatctctcaggcttaaattccatgcagtcttctccccatatt 13007291  T
Q  101 tgctgcatccttcccattgcatacaaagaatatatcaactttgtatttggaccaacatgttctccactaggtagtatatcagatttgat 189  Q
    || | |||||||||||| || |||||||| || |  ||| |||||||||||| |||| | |||||||||||||||||||| || |||||    
T  13007292 tgttccatccttcccatagcgtacaaagagtacaataaccttgtatttggactaacacgctctccactaggtagtatatcggaattgat 13007380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 13070376 - 13070188
Alignment:
Q  1 attgaatgctatgaacttgtaagacggtacatttataatccctcctctcgctgatatccatctttcaggcttaaattccaagcaatcatctccccatatt 100  Q
    |||||| ||||||||||||||||| || |||| ||||||   |||| || |||||| |||||| |||||||||||||||| ||| || ||||||||||||    
T  13070376 attgaaagctatgaacttgtaagatggaacatgtataatgtgtcctgtctctgatacccatctctcaggcttaaattccatgcagtcttctccccatatt 13070277  T
Q  101 tgctgcatccttcccattgcatacaaagaatatatcaactttgtatttggaccaacatgttctccactaggtagtatatcagatttgat 189  Q
    || | |||||||||||| || |||||||| || |  ||| |||||||||||| |||| | |||||||||||||||||||| ||||||||    
T  13070276 tgttccatccttcccatagcgtacaaagagtacaataaccttgtatttggactaacacgctctccactaggtagtatatcggatttgat 13070188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 209
Target Start/End: Original strand, 13086103 - 13086307
Alignment:
Q  5 aatgctatgaacttgtaagacggtacatttataatccctcctctcgctgatatccatctttcaggcttaaattccaagcaatcatctccccatatttgct 104  Q
    ||||||||||||||| |||| |||||||  | |||   |||| |  ||||||||||||| || ||||||||||| |||| ||| |  ||||||||||| |    
T  13086103 aatgctatgaacttgcaagatggtacatgcaaaatatgtcctttatctgatatccatctctcgggcttaaattcgaagcgatccttaccccatatttgtt 13086202  T
Q  105 gcatccttcccattgcatacaaagaatatatcaactttgtatttggaccaacatgttctccactaggtagtatatcagatttgatagcgcacttgtgctg 204  Q
     |||||||||||||||||||||||| ||||| ||||| ||||||||   |||||  |||||||||||||||||||||| |||||| || |||||||||||    
T  13086203 tcatccttcccattgcatacaaagagtatattaacttagtatttggtttaacataatctccactaggtagtatatcagctttgattgcacacttgtgctg 13086302  T
Q  205 aaatg 209  Q
    |||||    
T  13086303 aaatg 13086307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 13065413 - 13065225
Alignment:
Q  1 attgaatgctatgaacttgtaagacggtacatttataatccctcctctcgctgatatccatctttcaggcttaaattccaagcaatcatctccccatatt 100  Q
    |||||| ||||||||||||||||||||||||| ||||||   ||| ||   |||||||||||| |||||||||||||||| ||| || ||||||||||||    
T  13065413 attgaaagctatgaacttgtaagacggtacatgtataatttgtccgctttttgatatccatctctcaggcttaaattccatgcagtcttctccccatatt 13065314  T
Q  101 tgctgcatccttcccattgcatacaaagaatatatcaactttgtatttggaccaacatgttctccactaggtagtatatcagatttgat 189  Q
    | || |||||||||||||| ||||||| | ||||  | | ||||||||||||  |||||  |||||||||| |||||||||| ||||||    
T  13065313 ttctccatccttcccattgaatacaaatagtataatatccttgtatttggacttacatggactccactaggaagtatatcagctttgat 13065225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 13100992 - 13101180
Alignment:
Q  1 attgaatgctatgaacttgtaagacggtacatttataatccctcctctcgctgatatccatctttcaggcttaaattccaagcaatcatctccccatatt 100  Q
    |||||| ||||||||||||||||| ||||||| ||||||   ||||||| |||| | |||||| |||||||||||||||| ||| || ||||||||||||    
T  13100992 attgaaagctatgaacttgtaagatggtacatgtataatgtgtcctctctctgacacccatctctcaggcttaaattccatgcagtcttctccccatatt 13101091  T
Q  101 tgctgcatccttcccattgcatacaaagaatatatcaactttgtatttggaccaacatgttctccactaggtagtatatcagatttgat 189  Q
    || | |||||||||||| || |||||||| || |  ||| |||||||||||| || | | ||||||||||| |||||||| ||||||||    
T  13101092 tgttccatccttcccatagcgtacaaagagtacaataaccttgtatttggactaaaacgctctccactaggaagtatatcggatttgat 13101180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 189
Target Start/End: Original strand, 13161522 - 13161701
Alignment:
Q  10 tatgaacttgtaagacggtacatttataatccctcctctcgctgatatccatctttcaggcttaaattccaagcaatcatctccccatatttgctgcatc 109  Q
    ||||||||||||||| ||||||| ||||||  |||| ||| | ||||||||||| |||||||||||||||| ||| || || ||||||| ||| | ||||    
T  13161522 tatgaacttgtaagaaggtacatgtataatatctcccctctcagatatccatctctcaggcttaaattccatgcagtcttccccccatagttgttccatc 13161621  T
Q  110 cttcccattgcatacaaagaatatatcaactttgtatttggaccaacatgttctccactaggtagtatatcagatttgat 189  Q
    || ||||| | ||||| ||| || || ||  |||||||||||| || | |||||||||||||||||||||| ||||||||    
T  13161622 ctgcccatagaatacatagagtacattaaacttgtatttggactaatacgttctccactaggtagtatatcggatttgat 13161701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 36668117 - 36668235
Alignment:
Q  1 attgaatgctatgaacttgtaagacggtacatttataatccctcctctcgctgatatccatctttcaggcttaaattccaagcaatcatctccccatatt 100  Q
    |||||| || |||||||||||||| |||||||  ||  |||||||| ||   || | ||| || || || ||||||||||||||||| ||||||||||||    
T  36668117 attgaaagcaatgaacttgtaagaaggtacatgaattgtccctcctttcttagaaacccacctctctggtttaaattccaagcaatcttctccccatatt 36668216  T
Q  101 tgctgcatccttcccattg 119  Q
    | || || |||||| ||||    
T  36668217 tcctccacccttccaattg 36668235  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 101
Target Start/End: Original strand, 12164332 - 12164365
Alignment:
Q  68 ggcttaaattccaagcaatcatctccccatattt 101  Q
    |||||||||||||||||||| |||||||||||||    
T  12164332 ggcttaaattccaagcaatcttctccccatattt 12164365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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