View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8230_low_19 (Length: 203)
Name: NF8230_low_19
Description: NF8230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8230_low_19 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 53 - 203
Target Start/End: Original strand, 45952846 - 45952996
Alignment:
| Q |
53 |
acaacttacaagcattttaaaaatacatatacaaatcaaagaacgtcgtatttgatatcaaaattttgaagtaaaattgtcttcattgtatggaatctgt |
152 |
Q |
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| T |
45952846 |
acaacttacaagcattttaaaaatacatatacaaatcaaagaacgtcgtatttgatatcaaaattttgaagtaaaattgtcttcattgtatggaatctgt |
45952945 |
T |
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| Q |
153 |
tatggactagatctaatatattatgcagcccaagatacaccggatcaacac |
203 |
Q |
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| T |
45952946 |
tatggactagatctaacatattatgcagcacaagatacaccggatcaacac |
45952996 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 121
Target Start/End: Original strand, 25818027 - 25818090
Alignment:
| Q |
58 |
ttacaagcattttaaaaatacatatacaaatcaaagaacgtcgtatttgatatcaaaattttga |
121 |
Q |
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| T |
25818027 |
ttacaaacattttaaaaataaatagaaaaatcaaataactttgtatttgatatcaaaattttga |
25818090 |
T |
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