View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8230_low_2 (Length: 609)
Name: NF8230_low_2
Description: NF8230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8230_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 171 - 592
Target Start/End: Original strand, 5996180 - 5996582
Alignment:
| Q |
171 |
aatctcagaactcatacaaaatttattcttgacccaaagtgcataataaacttaaaattgcaaaaccattttgtaatttgaccaagctttacaaagttca |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5996180 |
aatctcagaactcatacaaaatttattcttgacccaaagtgcataataaacttaaaattgcaaaaccattttgtaattttaccaagctttacaaagttca |
5996279 |
T |
|
| Q |
271 |
caaaatgtttaactaaatcatatatgcttctcttcactttactttaaagaagtgcaaacatagttttccctcagtaactaaaacaccaatgaaatattca |
370 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5996280 |
caaaatgtttaactaaatcatatattcttctcttcactttactttaaagaagtgcaaacatagttttccctcagtaactaaaacacca------------ |
5996367 |
T |
|
| Q |
371 |
aggcatataaatttcactccaataacatgtcttgcatttatagttttgtttggcatatttttgctctaaaatataacaggtacaatcttcaggataacac |
470 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5996368 |
-----tataaatttcactccaataacatgtcttgcatttatagttttgtttggcatatttttgctctaaaatataacaggtacaatcttcaggataacac |
5996462 |
T |
|
| Q |
471 |
taggacatgttacatagacagaggccaagtttgaaaacttgggggaaactaaacatcaacctaggtagcttgtaaaggtgaaatgtgtgaattacatcat |
570 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
5996463 |
taggacatgtcacatagacagaggccaagtttgaaaacttgggggaaactaaacatcaacttaggtagcttgtaaaggtgaaa--tgtgagttacatcat |
5996560 |
T |
|
| Q |
571 |
gtaaacaaagcaaaagaccatt |
592 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
5996561 |
gtaaacaaagcaaaagaccatt |
5996582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 5995987 - 5996159
Alignment:
| Q |
1 |
caggttgcaaaggtgaaggtnnnnnnntatttacagtagcaagtttaaacttgttttgcattttggaaatacaaacaagaaaaacacacattgtcgaaaa |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5995987 |
caggttgcaaaggtgaaggtaaaaaactatttacagtagcaagtttaaacttgttttgcattttggaaatacaaacaagaaaaacacacattgtctaaag |
5996086 |
T |
|
| Q |
101 |
cttggaattaaatgtttggtaagatatgctattatcaattctaaattctatacagcacacaactattcaaaat |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5996087 |
cttggaattaaatgtttggtaagatatgctattatcaattctaaattctatgcagcacacaactattcaaaat |
5996159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University