View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8230_low_5 (Length: 404)
Name: NF8230_low_5
Description: NF8230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8230_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 34994666 - 34995028
Alignment:
| Q |
18 |
agacggtggggtcatataataat---ttggtgaactaagtggtgcaataggaaccccaccatgtgattgtttt-gttgggtatcttattgattgaatcat |
113 |
Q |
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| T |
34994666 |
agacggtggggtcatataataataatttggtgaactaagtggtgcaataggaaccccaccatgtgattgtttttgttgggtatcttattgattgaatcat |
34994765 |
T |
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| Q |
114 |
gcctgactggttgatctaagaaattttagttatggttgttagtgttggaacgtgacttagaagattaataatgaagtaacaacaaactttggtacctttt |
213 |
Q |
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| T |
34994766 |
gcctgactggttgatctaagaaattttagttatggttgttagtgttggaacgtgacttagaagattaataatgaagtaacaacaaactttggtacctttt |
34994865 |
T |
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| Q |
214 |
tcttggatgagacaaatttggtcctttaattgcatgaaaagataaatgattgggaaaatttgtctcgttcatagcatgattcgcttgtctatactgaaaa |
313 |
Q |
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| T |
34994866 |
tcttggatgagacaaatttggtcct-----------------taaatgattgggaaaatttgtctcgttcatagcatgattcgcttgtctatactgaaaa |
34994948 |
T |
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| Q |
314 |
atctgcatgtgttggcattggttgatcgtcgagtaatatttgtcaaaattgcaaaaagtgtgtctcaaatacaccttctt |
393 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34994949 |
atctgcatgtgttagcattggttgatcgtcgagtaatatttgtgaaaattgcaaaaagtgtgtctcaaatacaccttctt |
34995028 |
T |
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