View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8230_low_8 (Length: 373)
Name: NF8230_low_8
Description: NF8230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8230_low_8 |
 | |
|
| [»] scaffold0070 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 365
Target Start/End: Original strand, 25628683 - 25629033
Alignment:
| Q |
17 |
ccaagtacattttgtgaacaaaaaatctaaccatcctatcgaccaaaattaatttctctttatattttaagcaacagaaataaaccttaacaaaatctat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25628683 |
ccaagtacattttgtgaacaaaaaatctaaccatcctatcgaccaaaattaatttctctttatattttaagcaacagaaataaaccttaacaaaatctat |
25628782 |
T |
|
| Q |
117 |
caagttggaatccccaannnnnnnnc-tcaattcaaccctagaaacgagaatttttt-cttagattgnnnnnnngtaagaagttgaactaacctactgaa |
214 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
25628783 |
caagttggaatccccaattttttttcctcaattcaaccctagaaacaagaatttttttcttagattgtttttttgtaagaagttgaactaacccactgaa |
25628882 |
T |
|
| Q |
215 |
attgacacattatacttgagatcttaaataaagttcagagaagcacaccattaaaattataaagttatatctttttaatcataaataaaaacctttatat |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25628883 |
attgacacattatacttgagatcttaaataaagttcagagaagcacaccattagaattataaagttatatctttttaatcataaataaaaacctttatat |
25628982 |
T |
|
| Q |
315 |
atactttcatttcatcttgatatcttctcatacaacgttacttttcttctc |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
25628983 |
atactttcatttcatcttgatatcttctcatacaacattacttttcttctc |
25629033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 365
Target Start/End: Original strand, 25326425 - 25326774
Alignment:
| Q |
17 |
ccaagtacattttgt--gaacaaaaaatctaaccatcctatcgaccaaaattaatttctctttatattttaagcaacagaaataaaccttaacaaaatct |
114 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25326425 |
ccaagtacattttgtatgaacaaaaaatctaaccatcctatcgaccaaaattaatttttctttatattttaagcaacagaaataaaccttaacaaaatct |
25326524 |
T |
|
| Q |
115 |
atcaagttggaatccccaannnnnnnnctcaattcaaccctagaaacgagaattttttcttagattgnnnnnnngtaagaagttgaactaacctactgaa |
214 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||||||| |||||||||||||| |||| ||||||||||||| |||| || || |
|
|
| T |
25326525 |
ataaagttggaatccccaattttttt-ctcaattcaaccctagaaacaagaattttttcttacattgtttttttttaagaagttgaaccaacccaccaaa |
25326623 |
T |
|
| Q |
215 |
attgacacattatacttgagatcttaaataaagttcagagaagcacaccattaaaattataaagttatatctttttaatcataaataaaaacctttatat |
314 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||| ||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25326624 |
attgacacattgaacttgtgatcttaaataaagttaagagaagcaaaccaccataattataaagttatatctttttaatcataaataaaaacctttatat |
25326723 |
T |
|
| Q |
315 |
atactttcatttcatcttgatatcttctcatacaacgttacttttcttctc |
365 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
25326724 |
atactttcatttcatctctctatcttctcatacaacgttgtttttcttctc |
25326774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 94 - 353
Target Start/End: Complemental strand, 24895027 - 24894769
Alignment:
| Q |
94 |
aaataaaccttaacaaaatctatcaagttggaatccccaannnnnnnnctcaattcaaccctagaaacgagaatttttt-cttagattgnnnnnnngtaa |
192 |
Q |
| |
|
||||||| ||||||||||||||| ||||| |||||||||| |||||||||||||||||||| |||||||||| ||||||||| ||| |
|
|
| T |
24895027 |
aaataaaacttaacaaaatctataaagttagaatccccaattttttt-ctcaattcaaccctagaaacaagaatttttttcttagattgtttttttgtat |
24894929 |
T |
|
| Q |
193 |
gaagttgaactaacctactgaaattgacacattatacttgagatcttaaataaagttcagagaagcacaccattaaaattataaagttatatctttttaa |
292 |
Q |
| |
|
|||||||||| |||| || ||||||||||| | |||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24894928 |
gaagttgaaccaacccacagaaattgacacgcga-acttgagatcttaaataaagttaagaaaagcacaccaccaaaattataaagttatatctttttaa |
24894830 |
T |
|
| Q |
293 |
tcataaataaaaacctttatatatactttcatttcatcttgatatcttctcatacaacgtt |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24894829 |
tcataaataaaaacctttatatatactttcatttcatctctctatcttctcatacaacgtt |
24894769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 24895142 - 24895051
Alignment:
| Q |
17 |
ccaagtacattt-tgtgaacaaaaaatctaaccatcctatcgaccaaaattaatttctctttatattttaagcaacagaaataaaccttaac |
107 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24895142 |
ccaagtacatttgtatgaacaaaaaatctaaccatcatatcgaccaaaattaatttttctttatattttaagcaacagaaataaaccttaac |
24895051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 142 - 359
Target Start/End: Complemental strand, 31301 - 31084
Alignment:
| Q |
142 |
ctcaattcaaccctagaaacgagaattttttcttagattgnnnnnnngtaagaagttgaactaacctactgaaattgacacattatacttgagatcttaa |
241 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||| ||||||||||||| |||| || |||||||||||||| |||||||||||||| |
|
|
| T |
31301 |
ctcaattcaaccatagaaacaagaattttttcttagattgtttttttttaagaagttgaaccaaccaaccgaaattgacacattcaacttgagatcttaa |
31202 |
T |
|
| Q |
242 |
ataaagttcagagaagcacaccattaaaattataaagttatatctttttaatcataaataaaaacctttatatatactttcatttcatcttgatatcttc |
341 |
Q |
| |
|
|||||||| |||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31201 |
ataaagttaagagaagcacaccaccaaacttataaagttgtatctttttaatcataaataaaaacctttatatatactttcatttcatctctctatcttc |
31102 |
T |
|
| Q |
342 |
tcatacaacgttactttt |
359 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
31101 |
tcatacaacgttgctttt |
31084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 31463 - 31369
Alignment:
| Q |
17 |
ccaagtacattttgt--gaacaaaaaatctaaccatcctatcgaccaaaattaatttctct--ttatattttaagcaacagaaataaaccttaac |
107 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31463 |
ccaagtacattttgtatgaacaaaaaatctaaccatcctaacgaccaaaattaatttatcttattatattttaagcaacagaaataaaccttaac |
31369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University