View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8230_low_9 (Length: 359)
Name: NF8230_low_9
Description: NF8230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8230_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 345
Target Start/End: Original strand, 31389172 - 31389500
Alignment:
| Q |
18 |
catagcacaaccacataaatacttgtgatgccaaatatttcatac-tcaaaatgcagtttcattagcctatctactcatcacatgccacatgtcactaca |
116 |
Q |
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| T |
31389172 |
catagcacaaccacataaatacttgtgatgccaaatatttcatacctcaaaatgcagtttcattagcctatctactcatcacatgccacatgtcactaca |
31389271 |
T |
|
| Q |
117 |
tgcataattagccacatatctataattgctatatctcattcccactctcnnnnnnncaatgcaataacaaaacaacatcctcatcaaaacttttcaacat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31389272 |
tgcataattagccacatatctataattgctatatctcattcccactctctttttttcaatgcaataacaaaacaacatcctcatcaaaacttttcaacat |
31389371 |
T |
|
| Q |
217 |
aannnnnnnnncagccatggaaactagtatagcatgttactccagtggtgcttttcttcgtagtgtttctgccaaacactccctaccctccatcactccc |
316 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31389372 |
aatttttttttcagccatggaaactagtatagcatgttactccagtggtgcttttcttcgtagtgtttctgccaaacactccctaccctccatcactccc |
31389471 |
T |
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| Q |
317 |
tcttctgccttcagggtatgtactatagt |
345 |
Q |
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||||||||||||||||||||||| ||||| |
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| T |
31389472 |
tcttctgccttcagggtatgtacaatagt |
31389500 |
T |
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