View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8231_low_2 (Length: 398)
Name: NF8231_low_2
Description: NF8231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8231_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 4 - 385
Target Start/End: Original strand, 17295774 - 17296155
Alignment:
| Q |
4 |
tgcctacaaggagcaatttgggtaagaaaggtatattctggacatgaattgccctctcggtcatgctgaaattgagaaaagagaccatttattcatgcgc |
103 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| | |
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| T |
17295774 |
tgcctacaaggagcaatttgggtaagaaaggtacattctggacatgaattgtcctctcggtcatgttgaaattgagaaaagagaccatttattcatgtgt |
17295873 |
T |
|
| Q |
104 |
tgctctgctgctatggcagtttggtttgcgtctcctcttaggatacatgttgcggagcaattagacttatta-gctggatggagaagtggttggctgtcc |
202 |
Q |
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||| ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
17295874 |
tgccctgctgctatggcagtttggtttgcgtctcctcttgggata-atgttccggagcagttagacttattaagctggatggagaagtggttggctgtcc |
17295972 |
T |
|
| Q |
203 |
cagagctgcgtgtgaaacaactttttggcacctccctgtggctgatttggaagcacagaaatcaaaaagtctttaataatgttgattttgatccgttatt |
302 |
Q |
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| T |
17295973 |
cggaggtgcgtgtgaaacaactttttggaacctccctgtggctgatttggaagcacagaaatcaaaaagtctttaataatgttgattttgatccgttatt |
17296072 |
T |
|
| Q |
303 |
agtgtctcagaaggtgtctgcgctcatggaggaattttcgattgcaaatctgcctctcaaaaggggtcaggtacgtgatgtcc |
385 |
Q |
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||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
17296073 |
agtgtctcagaaggtgtctgcactcgtggaggaatttttgattgcaaatctgcctctaaaaaggggtcaggtacgtgttgtcc |
17296155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 4 - 374
Target Start/End: Complemental strand, 13523046 - 13522674
Alignment:
| Q |
4 |
tgcctacaaggagcaatttgggtaagaaaggtatat-tctggacatgaattgccctctcggtcatgctgaaattgagaaaagagaccatttattcatgcg |
102 |
Q |
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||||||| ||||||||||||||||||||||| ||| ||| || ||||||||||||||| |||||| |||||||||||| || ||||| ||||||||||| |
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| T |
13523046 |
tgcctaccaggagcaatttgggtaagaaaggcataagtcttgatatgaattgccctctctgtcatgttgaaattgagaacagggaccacttattcatgcg |
13522947 |
T |
|
| Q |
103 |
ctgctctgctgctatggcagtttggtttgcgtctcctcttaggatacatgttgcggagcaattagacttatt-agctggatggagaagtggttggctgtc |
201 |
Q |
| |
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|||| | |||||||| |||||||||||||| ||||||||| |||||||||| ||| ||| ||||| ||||| ||||||||||||||||| ||||||||| |
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| T |
13522946 |
ctgccccgctgctatagcagtttggtttgcatctcctcttgcgatacatgttccggtgcagttagatttattgagctggatggagaagtgtttggctgtc |
13522847 |
T |
|
| Q |
202 |
ccagagctgcgtgtgaaacaactttttggcacctccctgtggctgatttggaagcacagaaatcaaaaagtctttaataatgttgattttgatccgttat |
301 |
Q |
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||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||| || ||||||||||| || ||||||||||||||||||||| || |
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| T |
13522846 |
ccagagcagcgtgtgaaacaactgtttggcacctccctgtggctaatttggaagcataggaatcaaaaagttttcaataatgttgattttgatccgctac |
13522747 |
T |
|
| Q |
302 |
tagtgtctcagaaggtgtctgcgctcatggaggaattttcgattgcaaatctgcctctcaaaaggggtcaggt |
374 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
13522746 |
tagtgtctcagaaggtgtctgcgcttgtggaggaattttcgattgcaaatctgcctcttaaaaggggtcaggt |
13522674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 4 - 374
Target Start/End: Complemental strand, 29175866 - 29175506
Alignment:
| Q |
4 |
tgcctacaaggagcaatttgggtaagaaaggtatat-tctggacatgaattgccctctcggtcatgctgaaattgagaaaagagaccatttattcatgcg |
102 |
Q |
| |
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||||||| ||||||||||||||||||||||| ||| |||||| ||||| |||||| || |||||| |||||||||||| || || |||||||||||||| |
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| T |
29175866 |
tgcctaccaggagcaatttgggtaagaaaggcataagtctggatatgaactgccctatctgtcatgttgaaattgagaacagggatcatttattcatgcg |
29175767 |
T |
|
| Q |
103 |
ctgctctgctgctatggcagtttggtttgcgtctcctcttaggatacatgttgcggagcaattagacttatt-agctggatggagaagtggttggctgtc |
201 |
Q |
| |
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||| | ||||||||||||||||||||||||||||||||| ||||||||||| ||| ||| ||||| ||||| ||||||||||||||||| ||||||||| |
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| T |
29175766 |
ttgccccgctgctatggcagtttggtttgcgtctcctcttgggatacatgttccggtgcagttagatttattgagctggatggagaagtgtttggctgtc |
29175667 |
T |
|
| Q |
202 |
ccagagctgcgtgtgaaacaactttttggcacctccctgtggctgatttggaagcacagaaatcaaaaagtctttaataatgttgattttgatccgttat |
301 |
Q |
| |
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|| |||| ||||||||||||||| |||||||||||||||||||| ||||||||||| || ||||||||||| || ||||||||||||||||||||| | |
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| T |
29175666 |
cctgagcagcgtgtgaaacaactgtttggcacctccctgtggctaatttggaagcataggaatcaaaaagttttcaataatgttgattttgatccgccac |
29175567 |
T |
|
| Q |
302 |
tagtgtctcagaaggtgtctgcgctcatggaggaattttcgattgcaaatctgcctctcaaaaggggtcaggt |
374 |
Q |
| |
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| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29175566 |
t------------ggtgtctgcgcttgtggaggaattttcgattgcaaatctgcctcttaaaaggggtcaggt |
29175506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 41 - 385
Target Start/End: Original strand, 23505091 - 23505436
Alignment:
| Q |
41 |
ctggacatgaattgccctctcggtcatgctgaaattgagaaaagagaccatttattcatgcgctgctctgctgctatggcagtttggtttgcgtctcctc |
140 |
Q |
| |
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||||||||||| |||| ||| ||||| || ||| ||||| | ||| ||||||||||| | || | ||||||||||||||||||||| | || ||| |
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| T |
23505091 |
ctggacatgaactgccatctttgtcattttgcaatagagaatatggacaatttattcatgtgatgtccagctgctatggcagtttggtttacatcaactc |
23505190 |
T |
|
| Q |
141 |
ttaggatacatgttgcggagcaattagacttattagct-ggatggagaagtggttggctgtcccagagctgcgtgtgaaacaactttttggcacctccct |
239 |
Q |
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| |||| |||||| | ||||| | | | ||||| | | ||||| |||||||||||| ||| || | | | |||||||||||||||||||||||||||| |
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| T |
23505191 |
tagggatgcatgttcctgagcagtaaaatttattcggttggatgaagaagtggttggttgttcctaatcagtgtgtgaaacaactttttggcacctccct |
23505290 |
T |
|
| Q |
240 |
gtggctgatttggaagcacagaaatcaaaaagtctttaataatgttgattttgatccgttattagtgtctcagaaggtgtctgcgctcatggaggaattt |
339 |
Q |
| |
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|||||| ||||||||| | | |||| |||||||||| |||| ||| ||||||| ||||| || |||||||| |||||||||| |||| ||||| ||||| |
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| T |
23505291 |
gtggctaatttggaagtatataaattaaaaagtcttcaatattgtcaattttgacccgttgttggtgtctcataaggtgtctgtgctcttggagaaattt |
23505390 |
T |
|
| Q |
340 |
tcgattgcaaatctgcctctcaaaaggggtcaggtacgtgatgtcc |
385 |
Q |
| |
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| ||||||||| ||||||||||| | |||||| |||| ||||| |
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| T |
23505391 |
acttatgcaaatcttcctctcaaaagcgttcaggtgcgtgttgtcc |
23505436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 339
Target Start/End: Original strand, 40925967 - 40926089
Alignment:
| Q |
217 |
aaacaactttttggcacctccctgtggctgatttggaagcacagaaatcaaaaagtctttaataatgttgattttgatccgttattagtgtctcagaagg |
316 |
Q |
| |
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|||||||||| ||| |||||| |||||||||| |||||| | |||||| ||||||||||||||||||| || ||||||| | | || ||||||||| ||| |
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| T |
40925967 |
aaacaactttctggtacctccttgtggctgatctggaagtatagaaataaaaaagtctttaataatgtcgactttgatctgctgtttgtgtctcagcagg |
40926066 |
T |
|
| Q |
317 |
tgtctgcgctcatggaggaattt |
339 |
Q |
| |
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| ||| ||| ||||||||||| |
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|
| T |
40926067 |
tttctaagcttgtggaggaattt |
40926089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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