View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8231_low_3 (Length: 288)
Name: NF8231_low_3
Description: NF8231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8231_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 15 - 283
Target Start/End: Complemental strand, 56011784 - 56011514
Alignment:
| Q |
15 |
ggacatcaattggagggaccttgcagaagaattgttgaatcgtttctttaaataattcgttgaaaagaaaagaattttgtgacctcatgtccataatctg |
114 |
Q |
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| T |
56011784 |
ggacttcaattggagggaccttgcagaagaattgttgaatcgtttctttaaataattcgttgaaaagaaaagaattttgtgacctcatgtccataatctg |
56011685 |
T |
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| Q |
115 |
cccactaattaattaatatactgtttaattaggtcaggatgacaaattgacaatgacaatcacctttgagtatgcttctacaaagttcttttacaatcta |
214 |
Q |
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| T |
56011684 |
cccactaattaattaatatactgtttaattagatcaggatgacaaattgacaatgacaatcacctttgagtatgcttctacaaagttcttttacaatcta |
56011585 |
T |
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| Q |
215 |
ctaagg-ttctgtttggtaaaatggag-attgataaactagctaatagctgataatttatagctaatagtg |
283 |
Q |
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| T |
56011584 |
ctaaggtttctgtttggtaaaacagtgaattgataaactagctaatagctgatagtttataactgatagtg |
56011514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 219
Target Start/End: Complemental strand, 56011304 - 56011237
Alignment:
| Q |
152 |
gatgacaaattgacaatgacaatcacctttgagtatgcttctacaaagttcttttacaatctactaag |
219 |
Q |
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| T |
56011304 |
gatgataaattcacaatgacaatcacataggagtatacttttacaaagttccttttcaatctactaag |
56011237 |
T |
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