View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8231_low_5 (Length: 251)
Name: NF8231_low_5
Description: NF8231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8231_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 4251213 - 4250995
Alignment:
| Q |
20 |
agagtttgtggctttgattctttcgtatcgaatatttcccatgtagataacactctttgctttatcttatccaaatcttcatgtttgagcttaaaagtag |
119 |
Q |
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| T |
4251213 |
agagtttgtggctttgattctttcgtatcgaatatttcccatgtagataacactctttgctttatcttatccaaatcttcatgtttgagcttaaaagtag |
4251114 |
T |
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| Q |
120 |
cacgaacagagtcttcgagttgtggttcaaatgggaaaatctttaagcttctatcatttcctttttcacttgggaataatgtggatacaaggtccattac |
219 |
Q |
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| T |
4251113 |
cacgaacagagtcttcgagttgtggttcaaatgggaaaatctttaagcttctatcatttcctttttcacttgggaataatgtggatacaaggtccattac |
4251014 |
T |
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| Q |
220 |
gttatttccatttgggtct |
238 |
Q |
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| T |
4251013 |
gttatttccatttgggtct |
4250995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 24 - 193
Target Start/End: Complemental strand, 4246774 - 4246605
Alignment:
| Q |
24 |
tttgtggctttgattctttcgtatcgaatatttcccatgtagataacactctttgctttatcttatccaaatcttcatgtttgagcttaaaagtagcacg |
123 |
Q |
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| T |
4246774 |
tttgtggctttgattctcttgtatcgaatgtttcccatgttgataacaccctttgctttatcttatccaaatcttcgtgtttgagttcaaaagtagcgcg |
4246675 |
T |
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| Q |
124 |
aacagagtcttcgagttgtggttcaaatgggaaaatctttaagcttctatcatttcctttttcacttggg |
193 |
Q |
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| T |
4246674 |
aacacagtctttgagttttggttcaaaatggaaattctttaagcttctttcatttcttttttgacttggg |
4246605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 36 - 195
Target Start/End: Complemental strand, 4234181 - 4234022
Alignment:
| Q |
36 |
attctttcgtatcgaatatttcccatgtagataacactctttgctttatcttatccaaatcttcatgtttgagcttaaaagtagcacgaacagagtcttc |
135 |
Q |
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| T |
4234181 |
attcattcgtgtccaataattcccattttgataataccatttgctttatcttattcaaatcttcacgtgtgagcttgaatgtagaacgaacatagtcttc |
4234082 |
T |
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| Q |
136 |
gagttgtggttcaaatgggaaaatctttaagcttctatcatttcctttttcacttgggaa |
195 |
Q |
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| T |
4234081 |
gagttttggttcaaaaggtaaaatcttcaagcttctttcatttcctttttcatttgggaa |
4234022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 195
Target Start/End: Complemental strand, 4196424 - 4196279
Alignment:
| Q |
50 |
aatatttcccatgtagataacactctttgctttatcttatccaaatcttcatgtttgagcttaaaagtagcacgaacagagtcttcgagttgtggttcaa |
149 |
Q |
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| T |
4196424 |
aataattcccattttgttaacaccatttgctttatcttgttcaaatcttcacgtgtgagcttgaacgtagcacgaagagagtcttcgaggtttggttcaa |
4196325 |
T |
|
| Q |
150 |
atgggaaaatctttaagcttctatcatttcctttttcacttgggaa |
195 |
Q |
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| | |||||||| |||| ||| || |||||||||||| ||||||| |
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| T |
4196324 |
aagctaaaatcttcaagcatctttcgtttcctttttcatttgggaa |
4196279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 195
Target Start/End: Complemental strand, 4189530 - 4189390
Alignment:
| Q |
55 |
ttcccatgtagataacactctttgctttatcttatccaaatcttcatgtttgagcttaaaagtagcacgaacagagtcttcgagttgtggttcaaatggg |
154 |
Q |
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||||||| | |||||||| ||||||||||||| | |||||||||| | |||| || || || |||||||| |||||||| |||| ||||||||| | |
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| T |
4189530 |
ttcccattttgataacaccatttgctttatcttgttcaaatcttcacgcgtgagattgaatgtggcacgaacggagtcttcaagttttggttcaaagtgt |
4189431 |
T |
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| Q |
155 |
aaaatctttaagcttctatcatttcctttttcacttgggaa |
195 |
Q |
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| T |
4189430 |
aaaatatttaagctatgttcgtttcctttttcgcttgggaa |
4189390 |
T |
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