View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8232_high_4 (Length: 337)
Name: NF8232_high_4
Description: NF8232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8232_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 35863456 - 35863776
Alignment:
| Q |
1 |
aatggtcatttaactggattctgtaagtggcaaatttaaactgttgtatcaccttcctccttccaagtctgaatgtgaggaatggccatgttcagatgct |
100 |
Q |
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| T |
35863456 |
aatggtcatttaactggattctgtaagtggcaaatttaaactgttgtatcaccttcctccttccaagtctgaatgtgaggaatggccatgttcagatgct |
35863555 |
T |
|
| Q |
101 |
gtcctcacggaatatgaattgtcccctcctcctggaaatatttttggctggacgactgcatccaaatttgttaattattataggtatacccttcgacaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35863556 |
gtcctcacggaatatgaattgtcccctcctcctggaaatatttctggctggacgactgcatccaaatttgttagttattataggtatacccttcgacaaa |
35863655 |
T |
|
| Q |
201 |
taatttagaaatatgattgatcaaataaccaagtaaagatgaaacataccatgaatttggggagtaccattatagcctggaatgttctctggaagctctt |
300 |
Q |
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| T |
35863656 |
taatttagaaatatgattgatcaaataaccaagtaaagatgaaacataccatgaatttggggagtaccattatagcctggaatgttctctggaagctctt |
35863755 |
T |
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| Q |
301 |
cccctgccggcagcaacttcc |
321 |
Q |
| |
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||||| ||||||||||||||| |
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| T |
35863756 |
cccctaccggcagcaacttcc |
35863776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 34813022 - 34813266
Alignment:
| Q |
2 |
atggtcatttaactggattctgtaagtggcaaatttaaactgttgtatcaccttcctccttccaagtctgaatgtgaggaatggccatgttcagatgctg |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||| |||||||| |||||||||||||||||||||| | ||||| |||||||||| |
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| T |
34813022 |
atggtcatttaactggattctgtaagtggcaaatttaaattattgtattaccttcctgtttccaagtctgaatgtgaggaaggaccatgatcagatgctg |
34813121 |
T |
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| Q |
102 |
tcctcacggaatatgaattgtcccctcctcctggaaatatttttggctggacgactgcatccaaatttgttaattattataggtatacccttcgacaaat |
201 |
Q |
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| | ||||||||||| ||||| ||||||| |||||||| | || | |||| |||||| ||||||||| ||||||| ||||||| || |||| | |
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| T |
34813122 |
tacccacggaatatgtgttgtctcctcctcttggaaatacgtctgaaggaacgaatgcatcacaatttgttagttattattggtatactctataacaact |
34813221 |
T |
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| Q |
202 |
aatttagaaatatgattgatcaaataaccaagtaaagatgaaacatacca |
251 |
Q |
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||||||||||||||| || |||||||||||| |||||||||||||| |
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| T |
34813222 |
aatttagaaatatgaatg-----ataaccaagtaatgatgaaacatacca |
34813266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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