View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8232_high_5 (Length: 311)
Name: NF8232_high_5
Description: NF8232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8232_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 13 - 293
Target Start/End: Complemental strand, 12690295 - 12690015
Alignment:
| Q |
13 |
gtgagatgaatttggaggtttggaaacgttttaccaatcgtggctattgagatggcatacaggagctattctcataacagttaattgtgtatgattatat |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12690295 |
gtgagatgaatttggaggtttggaaacgttttaccaatcgtggctattgagatggcatacaggagctattctcataacaattaattgtgtatgattatat |
12690196 |
T |
|
| Q |
113 |
atttaattgaaacgatgcaaaataatagaggaacttttatcgtatatgccgatgtctcaaacatgtgaacacacttattttgaagcttttcaaacatcga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
12690195 |
atttaattgaaacgatgcaaaataatagaggaacttttatcgtatacgctgatgtctccaacatgtgaacacacttattttaaagcttttcaaacatcga |
12690096 |
T |
|
| Q |
213 |
tgaactacaatcatgataatgatgccttcctttgaaaccgacaaaatatgagcaaaaacttatctggtctttgagtatgat |
293 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12690095 |
tgaacgacaatcatgataatgatgccttcctttgaaaccgacaaaatatgagcaaaaacttatctggtctttgagtctgat |
12690015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 175 - 293
Target Start/End: Original strand, 20678556 - 20678674
Alignment:
| Q |
175 |
atgtgaacacacttattttgaagcttttcaaacatcgatgaactacaatcatgataatgatgccttcctttgaaaccgacaaaatatgagcaaaaactta |
274 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
20678556 |
atgtgaacacacttattttgaagcttttcaaacatcaatgaacgagaatcatgataatgatgccttcctttgaaacctacaaaatatgagcgaaaactta |
20678655 |
T |
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| Q |
275 |
tctggtctttgagtatgat |
293 |
Q |
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| T |
20678656 |
tatggtctttgagtctgat |
20678674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 155 - 293
Target Start/End: Complemental strand, 14367846 - 14367708
Alignment:
| Q |
155 |
tatatgccgatgtctcaaacatgtgaacacacttattttgaagcttttcaaacatcgatgaactacaatcatgataatgatgccttcctttgaaaccgac |
254 |
Q |
| |
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||||||| ||||||| || ||||||||||| ||||||||||||||| ||| ||| |||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
14367846 |
tatatgctaatgtctccaaaatgtgaacacatttattttgaagctttcaaaatatcaatgaacgacaatcatgataatgatgccatcctttgaaaccgac |
14367747 |
T |
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| Q |
255 |
aaaatatgagcaaaaacttatctggtctttgagtatgat |
293 |
Q |
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||||||||||| |||||||||||||||||||||| |||| |
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| T |
14367746 |
aaaatatgagcgaaaacttatctggtctttgagtctgat |
14367708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 234
Target Start/End: Complemental strand, 18974925 - 18974819
Alignment:
| Q |
132 |
aaataatagaggaacttttatcgtatat----gccgatgtctcaaacatgtgaacacacttattttgaagcttttcaaacatcgatgaactacaatcatg |
227 |
Q |
| |
|
|||||||||||||||||||||| ||||| || ||||||| || |||||||| || ||||||||||||||| |||||||| |||||| ||||||||| |
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| T |
18974925 |
aaataatagaggaacttttatcatatatatatgctaatgtctccaaaatgtgaacgcatttattttgaagctttccaaacatcaatgaacgacaatcatg |
18974826 |
T |
|
| Q |
228 |
ataatga |
234 |
Q |
| |
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||||||| |
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| T |
18974825 |
ataatga |
18974819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 155 - 293
Target Start/End: Original strand, 19575709 - 19575847
Alignment:
| Q |
155 |
tatatgccgatgtctcaaacatgtgaacacacttattttgaagcttttcaaacatcgatgaactacaatcatgataatgatgccttcctttgaaaccgac |
254 |
Q |
| |
|
||||||| ||||||| || ||||||||||| ||||||||||||||| ||| ||| |||||| ||||||||||||||||||||||||||||||| | | |
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| T |
19575709 |
tatatgctaatgtctccaaaatgtgaacacatttattttgaagctttcaaaatatcaatgaacgacaatcatgataatgatgccttcctttgaaagcttc |
19575808 |
T |
|
| Q |
255 |
aaaatatgagcaaaaacttatctggtctttgagtatgat |
293 |
Q |
| |
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||||||||||| |||||||||||||||||||||| |||| |
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| T |
19575809 |
aaaatatgagcgaaaacttatctggtctttgagtctgat |
19575847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 234
Target Start/End: Original strand, 5330949 - 5331055
Alignment:
| Q |
132 |
aaataatagaggaacttttatcgtatat----gccgatgtctcaaacatgtgaacacacttattttgaagcttttcaaacatcgatgaactacaatcatg |
227 |
Q |
| |
|
|||||||||||||||||||||| ||||| || ||||||| || |||||||| || ||||||||||||||| |||||||| |||||| ||||||||| |
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| T |
5330949 |
aaataatagaggaacttttatcatatatatatgctaatgtctccaaaatgtgaacgcatttattttgaagctttccaaacatcaatgaacgacaatcatg |
5331048 |
T |
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| Q |
228 |
ataatga |
234 |
Q |
| |
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||||||| |
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| T |
5331049 |
ataatga |
5331055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 234
Target Start/End: Original strand, 19806760 - 19806866
Alignment:
| Q |
132 |
aaataatagaggaacttttatcgtatat----gccgatgtctcaaacatgtgaacacacttattttgaagcttttcaaacatcgatgaactacaatcatg |
227 |
Q |
| |
|
|||||||||||||||||||||| ||||| || ||||||| || |||||||| || ||||||||||||||| |||||||| |||||| ||||||||| |
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| T |
19806760 |
aaataatagaggaacttttatcatatatatatgctaatgtctccaaaatgtgaacgcatttattttgaagctttccaaacatcaatgaacgacaatcatg |
19806859 |
T |
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| Q |
228 |
ataatga |
234 |
Q |
| |
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||||||| |
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|
| T |
19806860 |
ataatga |
19806866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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