View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8232_high_6 (Length: 304)

Name: NF8232_high_6
Description: NF8232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8232_high_6
NF8232_high_6
[»] chr4 (1 HSPs)
chr4 (14-287)||(5811426-5811699)
[»] chr3 (1 HSPs)
chr3 (17-287)||(27736748-27737018)
[»] chr8 (5 HSPs)
chr8 (16-255)||(32627783-32628022)
chr8 (17-255)||(32704008-32704250)
chr8 (117-254)||(32709822-32709959)
chr8 (17-267)||(7293469-7293719)
chr8 (166-248)||(7298092-7298174)
[»] chr6 (2 HSPs)
chr6 (46-262)||(21943661-21943877)
chr6 (14-257)||(20115787-20116030)
[»] chr5 (1 HSPs)
chr5 (96-245)||(8028972-8029121)


Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 14 - 287
Target Start/End: Original strand, 5811426 - 5811699
Alignment:
Q  14 cagagaagtagcacgggccgatttcagtttccatttcattacgtagtttttctttgaaggtgtcaagggacataaatacgtcgttgaaatcatttcccgg 113  Q
    ||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5811426 cagagaagtagcaaggacccatttcagtttccatttcattacgtagtttttctttgaaggtgtcaagggacataaatacgtcgttgaaatcatttcccgg 5811525  T
Q  114 tagatcgttcaaaaagactttatattcgggagatttatgattaagttctcgacaaagcttttcaacaaccttgataatttcagagatcaccaagaaagtg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5811526 tagatcgttcaaaaagactttatattcgggagatttatgattaagttctcgacaaagcttttcaacaaccttgataatttcagagatcaccaagaaagtg 5811625  T
Q  214 tttggtccaaaagagcaacccaagtctgcaattgccaagcttctaggaagtgtgttgcagtatagactggttat 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5811626 tttggtccaaaagagcaacccaagtctgcaattgccaagcttctaggaagtgtgttgcagtatagactggttat 5811699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 17 - 287
Target Start/End: Original strand, 27736748 - 27737018
Alignment:
Q  17 agaagtagcacgggccgatttcagtttccatttcattacgtagtttttctttgaaggtgtcaagggacataaatacgtcgttgaaatcatttcccggtag 116  Q
    |||||||||||||||| |||| |||||||||||||| ||||||||| ||||||||||||||||||||| | ||||||| |||||| ||||||||||||||    
T  27736748 agaagtagcacgggcctattttagtttccatttcatcacgtagtttctctttgaaggtgtcaagggacttgaatacgttgttgaagtcatttcccggtag 27736847  T
Q  117 atcgttcaaaaagactttatattcgggagatttatgattaagttctcgacaaagcttttcaacaaccttgataatttcagagatcaccaagaaagtgttt 216  Q
    ||| |||||||| ||||||||||| ||||||||||||| | |  || ||||||| ||||| ||| | ||||||||||| || |||||||| | |||||||    
T  27736848 atcattcaaaaatactttatattcaggagatttatgatgatgcacttgacaaagtttttccacacctttgataatttctgatatcaccaacatagtgttt 27736947  T
Q  217 ggtccaaaagagcaacccaagtctgcaattgccaagcttctaggaagtgtgttgcagtatagactggttat 287  Q
    || |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||  |||||||    
T  27736948 ggcccaaaagagcaacccaagtctgcaattgccaagcttctgggaagtgtgttgcaatataggttggttat 27737018  T

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Target: chr8 (Bit Score: 116; Significance: 5e-59; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 16 - 255
Target Start/End: Original strand, 32627783 - 32628022
Alignment:
Q  16 gagaagtagcacgggccgatttcagtttccatttcattacgtagtttttctttgaaggtgtcaagggacataaatacgtcgttgaaatcatttcccggta 115  Q
    |||||| |||| || || ||||||||  ||||||||| | ||||||||||||||||  ||||||||||| |||||| |  |||||| |||||||||||||    
T  32627783 gagaagaagcatggacccatttcagtccccatttcatcaagtagtttttctttgaaaatgtcaagggacgtaaatatggtgttgaagtcatttcccggta 32627882  T
Q  116 gatcgttcaaaaagactttatattcgggagatttatgattaagttctcgacaaagcttttcaacaaccttgataatttcagagatcaccaagaaagtgtt 215  Q
    ||||||||||| | |   ||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||| ||  |||||||||| ||||||||    
T  32627883 gatcgttcaaatatatcatatattcgggagatttatgattaagttttcgacaaagcttttccacaactttgataatatctaagatcaccaacaaagtgtt 32627982  T
Q  216 tggtccaaaagagcaacccaagtctgcaattgccaagctt 255  Q
    || |||| |||||||||| ||||||||||||| |||||||    
T  32627983 tgatccagaagagcaacctaagtctgcaattgtcaagctt 32628022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 32704008 - 32704250
Alignment:
Q  17 agaagtagcacgggccgatttcagtttccatttcattacgtagtttttctttgaaggtgtcaagggacataaatacgtcgttgaaatcatttcccggtag 116  Q
    |||||||||| ||  | ||||| ||||||||||||    |||| ||||||||||| ||||| |||||| ||||||| | |||||| || || || |||||    
T  32704008 agaagtagcaaggtaccatttcggtttccatttcagcctgtagattttctttgaacgtgtcgagggacctaaatacattgttgaagtcgttccctggtag 32704107  T
Q  117 atcgttcaaaaagactttatat----tcgggagatttatgattaagttctcgacaaagcttttcaacaaccttgataatttcagagatcaccaagaaagt 212  Q
    ||||||||||||||| ||||||    || ||||||||||||||||| |||||||||| |||||| |||||||||||| | || |||||| |||| |||||    
T  32704108 atcgttcaaaaagaccttatatatattcaggagatttatgattaagctctcgacaaatcttttccacaaccttgatagtatctgagatcgccaacaaagt 32704207  T
Q  213 gtttggtccaaaagagcaacccaagtctgcaattgccaagctt 255  Q
    |||||||||| ||||||||||||| ||||||||||||||||||    
T  32704208 gtttggtccataagagcaacccaaatctgcaattgccaagctt 32704250  T

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Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 117 - 254
Target Start/End: Original strand, 32709822 - 32709959
Alignment:
Q  117 atcgttcaaaaagactttatattcgggagatttatgattaagttctcgacaaagcttttcaacaaccttgataatttcagagatcaccaagaaagtgttt 216  Q
    ||||||||| ||||| || ||||||||||||| |||||| |  ||||||||||||||||| || |||||||||| ||| || | |||||| |||||||||    
T  32709822 atcgttcaagaagaccttgtattcgggagattcatgattcaactctcgacaaagcttttccacgaccttgataaattctgataccaccaacaaagtgttt 32709921  T
Q  217 ggtccaaaagagcaacccaagtctgcaattgccaagct 254  Q
    || ||| ||||||||||||||||||||||||| |||||    
T  32709922 ggcccagaagagcaacccaagtctgcaattgctaagct 32709959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 7293469 - 7293719
Alignment:
Q  17 agaagtagcacgggccgatttcagtttccatttcattacgtagtttttctttgaaggtgtcaagggacataaatacgtcgttgaaatcatttcccggtag 116  Q
    |||||||||| ||||  ||||||||||  ||||||| | ||||||| | ||| ||| | ||||| ||| |||| | || |||||| ||||| || |  ||    
T  7293469 agaagtagcaagggctcatttcagttttgatttcatcaagtagtttatgtttaaagctatcaagtgacttaaaaatgttgttgaagtcattccctgaaag 7293568  T
Q  117 atcgttcaaaaagactttatattcgggagatttatgattaagttctcgacaaagcttttcaacaaccttgataatttcagagatcaccaagaaagtgttt 216  Q
    |||||| |||||||  || ||||||||||||  ||  || | || | | |||||||| || |||||| |||| ||||| || | |||  | |||||||||    
T  7293569 atcgttaaaaaagatcttgtattcgggagatgcatatttcaattgttggcaaagcttctccacaaccatgatgatttctgacaccacagacaaagtgttt 7293668  T
Q  217 ggtccaaaagagcaacccaagtctgcaattgccaagcttctaggaagtgtg 267  Q
     ||||| |||| |||||||  ||||||||||| | |||||| |||||||||    
T  7293669 tgtccacaagaacaacccagatctgcaattgcaaggcttctgggaagtgtg 7293719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 7298092 - 7298174
Alignment:
Q  166 caaagcttttcaacaaccttgataatttcagagatcaccaagaaagtgtttggtccaaaagagcaacccaagtctgcaattgc 248  Q
    |||||||| || |||||| ||||||| || || | ||| || ||||||||||||||| |||| ||||| || |||||||||||    
T  7298092 caaagcttctccacaaccatgataatatctgataccacaaacaaagtgtttggtccagaagaacaacctaaatctgcaattgc 7298174  T

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Target: chr6 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 46 - 262
Target Start/End: Original strand, 21943661 - 21943877
Alignment:
Q  46 atttcattacgtagtttttctttgaaggtgtcaagggacataaatacgtcgttgaaatcatttcccggtagatcgttcaaaaagactttatattcgggag 145  Q
    ||||||||||  ||||||||||||||||| ||||||||| ||||||||| ||||||||| ||||| ||||||||||||||||| || |||||||||||||    
T  21943661 atttcattacaaagtttttctttgaaggtctcaagggacctaaatacgttgttgaaatcgtttccgggtagatcgttcaaaaataccttatattcgggag 21943760  T
Q  146 atttatgattaagttctcgacaaagcttttcaacaaccttgataatttcagagatcaccaagaaagtgtttggtccaaaagagcaacccaagtctgcaat 245  Q
    ||| |||||| |  ||| ||||||||||||| ||||| || ||||| || ||||||||||| ||||| ||| ||||| |||| ||||||||||||||||     
T  21943761 attcatgattcaactcttgacaaagcttttccacaacatttataatctccgagatcaccaacaaagtatttagtccagaagaacaacccaagtctgcaac 21943860  T
Q  246 tgccaagcttctaggaa 262  Q
     || |||||||||||||    
T  21943861 ggctaagcttctaggaa 21943877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 14 - 257
Target Start/End: Complemental strand, 20116030 - 20115787
Alignment:
Q  14 cagagaagtagcacgggccgatttcagtttccatttcattacgtagtttttctttgaaggtgtcaagggacataaatacgtcgttgaaatcatttcccgg 113  Q
    ||||||||||||| || || |||| | |||||| |||||||   || |||||||||||||||||||||||| |||||| | ||||||| || ||||| |     
T  20116030 cagagaagtagcaaggacccattttattttccaattcattagaaagcttttctttgaaggtgtcaagggacttaaatatgccgttgaagtcgtttccgga 20115931  T
Q  114 tagatcgttcaaaaagactttatattcgggagatttatgattaagttctcgacaaagcttttcaacaaccttgataatttcagagatcaccaagaaagtg 213  Q
    ||||||||||||| |||| | |||||| ||||||| |||||| | ||||  |||||||||||| ||||||||||||||||| ||||||||||| || |||    
T  20115930 tagatcgttcaaagagacatcatattcaggagattcatgattcaattctatacaaagcttttccacaaccttgataatttctgagatcaccaacaaggtg 20115831  T
Q  214 tttggtccaaaagagcaacccaagtctgcaattgccaagcttct 257  Q
    ||||||||  |||||||||| |||||||||| ||| || |||||    
T  20115830 tttggtcctgaagagcaacctaagtctgcaactgcgaatcttct 20115787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 245
Target Start/End: Complemental strand, 8029121 - 8028972
Alignment:
Q  96 gttgaaatcatttcccggtagatcgttcaaaaagactttatattcgggagatttatgattaagttctcgacaaagcttttcaacaaccttgataatttca 195  Q
    |||||||||||| ||  | ||||| ||||  |||||||  ||||| ||||| |  |||||| ||||| | ||||| || ||||| |  ||||||| ||||    
T  8029121 gttgaaatcattcccttgaagatcattcatgaagacttggtattctggagactcgtgattatgttcttggcaaagtttatcaactaatttgataacttca 8029022  T
Q  196 gagatcaccaagaaagtgtttggtccaaaagagcaacccaagtctgcaat 245  Q
    || |||||||| ||||||||||| ||| |||| |||||||| ||||||||    
T  8029021 gatatcaccaacaaagtgtttggcccagaagaacaacccaaatctgcaat 8028972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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