View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8232_low_10 (Length: 209)
Name: NF8232_low_10
Description: NF8232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8232_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 8e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 31371931 - 31372104
Alignment:
| Q |
19 |
atgcagtttttggcgatgattggttacaaaaaatcagagcaaaggtccaacaaaacattgaactctatcaaagaaactcatgggataaggtgttagaatt |
118 |
Q |
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| T |
31371931 |
atgcagtttttggcgatgattggttacaaaaaatcagagcaaaggtccaacaaaacattgaactctatcaaagaaactcatgggataaggtgttagaatt |
31372030 |
T |
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| Q |
119 |
tttgaagttggatatcaatgattccatggaagttaattttgtagtagatttgattaaagaaaagattagtttgt |
192 |
Q |
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| T |
31372031 |
tttgaagttggatatcaatgattccatggaagttaattttgtagtagatttgattaaagaaaagattagtttgt |
31372104 |
T |
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Target: chr5; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 9 - 192
Target Start/End: Original strand, 31324490 - 31324673
Alignment:
| Q |
9 |
agtgagatgaatgcagtttttggcgatgattggttacaaaaaatcagagcaaaggtccaacaaaacattgaactctatcaaagaaactcatgggataagg |
108 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31324490 |
agtgatatggatgcagtttttggcgatgattggttacaaaaaatcagagcaaaggtccaacaaaacattgaactctatcaaagaaactcatgggataagg |
31324589 |
T |
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| Q |
109 |
tgttagaatttttgaagttggatatcaatgattccatggaagttaattttgtagtagatttgattaaagaaaagattagtttgt |
192 |
Q |
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| T |
31324590 |
tgttagaatttttgaagttggatatcaatgattccatggaagttaattttgtagtagatttgatgaaagaaaagattagtttgt |
31324673 |
T |
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