View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8232_low_11 (Length: 205)
Name: NF8232_low_11
Description: NF8232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8232_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 7706485 - 7706657
Alignment:
| Q |
20 |
cgggggacatggtaatatagcattagcatgtgggtttttgaagtaaaggatagaggtaaatggaaaaatacaaggatttatattagaaccatgtgcatat |
119 |
Q |
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| T |
7706485 |
cgggggacatagtaatatagcattagcatgtgggtttttgaagtaaaggatagaagtaaatggaaaaatacaaggatttatattagaaccatgtgcatat |
7706584 |
T |
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| Q |
120 |
agtctagtcagacatctagattacatattaataggaagaatgaaaacaaaaaatcaatagactcatgatagta |
192 |
Q |
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| T |
7706585 |
agtctagtcagacatctaaattacatagtaataggaagaatgaaaacaaaaaatcaatagagtcatgatagta |
7706657 |
T |
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Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 7702820 - 7702888
Alignment:
| Q |
33 |
aatatagcattagcatgtgggtttttgaagtaaaggatagaggtaaatggaaaaatacaaggatttata |
101 |
Q |
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| T |
7702820 |
aatataacattagccggtgggtttttgaagcaaaggatagaggtaaatggaaaaatacaaggatttata |
7702888 |
T |
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