View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8232_low_2 (Length: 479)
Name: NF8232_low_2
Description: NF8232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8232_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 13 - 462
Target Start/End: Complemental strand, 50804695 - 50804246
Alignment:
| Q |
13 |
tttggtgtttattggggctggatcagatccttatgaagttataacaaatgttttctagtgagtttcacaatacatgctttaccttttcaatatactcttc |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804695 |
tttggtgtttattggggctggatcagatccttatgaagttataacaaatgttttctagtgagtttcacaatacatgctttaccttttcaatatactcttc |
50804596 |
T |
|
| Q |
113 |
tgaggtgatatgaactaaaacatgttccattagtgcagtattaagacttaactaacttattgcttaatgagacaattcctaatttgcagtgataaacttt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804595 |
tgaggtgatatgaactaaaacatgttccattagtgcagtattaagacttaactaacttattgcttaatgagacaattcctaatttgcagtgataaacttt |
50804496 |
T |
|
| Q |
213 |
ttgtgcttcgtataaatgtgttgttaactagaaccatcaannnnnnnctttgttcaggactattgagtcgggttgaataacataattttatatcattgta |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804495 |
ttgtgcttcgtataaatgtgttgttaactagaaccatcaatttttttctttgttcaggactattgagtcgggttgaataacataattttatatcattgta |
50804396 |
T |
|
| Q |
313 |
tctacatctttttgtttgctttgtttggattgataggagatgcgttgtggaacaccgatgggcaaggagaatgcatttgcagcattgctcgagttatgcc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804395 |
tctacatctttttgtttgctttgtttggattgataggagatgcgttgtggaacaccgatgggcaaggagaatgcatttgcagcattgctcgagttatgcc |
50804296 |
T |
|
| Q |
413 |
ggagtggaggttcagctgcaactgaaagggttgttaaggcaccacctatt |
462 |
Q |
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| T |
50804295 |
ggagtggaggttcagctgcaactgaaagggtggttaaggcaccacctatt |
50804246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 13 - 462
Target Start/End: Original strand, 50871182 - 50871631
Alignment:
| Q |
13 |
tttggtgtttattggggctggatcagatccttatgaagttataacaaatgttttctagtgagtttcacaatacatgctttaccttttcaatatactcttc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50871182 |
tttggtgtttattggggctggatcagatccttatgaagttataacaaatgttttctagtgagtttcacaatacatgctttaccttttcaatatactcttc |
50871281 |
T |
|
| Q |
113 |
tgaggtgatatgaactaaaacatgttccattagtgcagtattaagacttaactaacttattgcttaatgagacaattcctaatttgcagtgataaacttt |
212 |
Q |
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| T |
50871282 |
tgaggtgatatgaactaaaacatgttccattagtgcagtattaagacttaactaacttattgcttaatgagacaattcctaatttgcagtgataaacttt |
50871381 |
T |
|
| Q |
213 |
ttgtgcttcgtataaatgtgttgttaactagaaccatcaannnnnnnctttgttcaggactattgagtcgggttgaataacataattttatatcattgta |
312 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50871382 |
ttgtgcttcgtataaatgtgttgttaactagaaccatcaatttttttctttgttcaggactattgagtcgggttgaataacataattttatatcattgta |
50871481 |
T |
|
| Q |
313 |
tctacatctttttgtttgctttgtttggattgataggagatgcgttgtggaacaccgatgggcaaggagaatgcatttgcagcattgctcgagttatgcc |
412 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50871482 |
tctacatctttttgtttgctttgtttggattgataggagatgcgttgtggaacaccgatgggcaaggagaatgcatttgcagcattgctcgagttatgcc |
50871581 |
T |
|
| Q |
413 |
ggagtggaggttcagctgcaactgaaagggttgttaaggcaccacctatt |
462 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
50871582 |
ggagtggaggttcagctgcaactgaaagggtggttaaggcaccacctatt |
50871631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 13 - 462
Target Start/End: Original strand, 19057490 - 19057941
Alignment:
| Q |
13 |
tttggtgtttattggggctggatcagatccttatgaagttataacaaatgttttctagtgagtttcacaatacatgctttaccttttcaatatactcttc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19057490 |
tttggtgtttattggggctggatcagatccttatgaagttataacaaatgctgtcaagtgagtttcacaatacatgctttaccttttcaatatactcttc |
19057589 |
T |
|
| Q |
113 |
tgaggtgatatgaactaaaacatgttccattagtgcagtattaagacttaactaacttattgcttaatgagacaattcctaatttgcagtgataaacttt |
212 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
19057590 |
tgaagtgatatgaactaaaacatgttccattagtgcagtattaagacttaactaacttattgcttaattagacaattcctaatttgcagtgataaacttt |
19057689 |
T |
|
| Q |
213 |
ttgtgcttcgtataaatgtgttgttaactagaaccatcaannnnnnnctttgttcaggactattgagtcgggttgaataacataattttatatcattgta |
312 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
19057690 |
ttgtgcttcttataaatgtgttgttaactagaaccatcaatttttttctttgttcaggactgttgagtcgggttgaataacatacttttatatcattgta |
19057789 |
T |
|
| Q |
313 |
tctacatctttttgtttgctttgtttggattgatagga--gatgcgttgtggaacaccgatgggcaaggagaatgcatttgcagcattgctcgagttatg |
410 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
19057790 |
tttacatctttttgtttgctttgtttggattgataggaatgatgcgttgtggaacaccgatgggtaaggagaatgcagttgcagcattgctcgagttatg |
19057889 |
T |
|
| Q |
411 |
ccggagtggaggttcagctgcaactgaaagggttgttaaggcaccacctatt |
462 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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|
| T |
19057890 |
ccggagtggaggttcagctgcaactgaaagggtggttaaggcaccagctatt |
19057941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 338 - 462
Target Start/End: Original strand, 5286030 - 5286156
Alignment:
| Q |
338 |
tggattgatagga--gatgcgttgtggaacaccgatgggcaaggagaatgcatttgcagcattgctcgagttatgccggagtggaggttcagctgcaact |
435 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5286030 |
tggattgataggaatgatgcgttgtggaacaccgaggggtaaggagaatgcagtcgcagcattgctcgagttatgccggagtggaggttcagctgcaact |
5286129 |
T |
|
| Q |
436 |
gaaagggttgttaaggcaccacctatt |
462 |
Q |
| |
|
|||||||| |||||||||||| ||||| |
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|
| T |
5286130 |
gaaagggtagttaaggcaccagctatt |
5286156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 42349235 - 42349325
Alignment:
| Q |
13 |
tttggtgtttattggggctggatcagatccttatgaagttataacaaatgttttctagtgagtttcacaatacatgctttaccttttcaat |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | || |||||||||| | || ||||||||||||| ||| || |||||||||||||| |
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| T |
42349235 |
tttggtgtttattggggctggatcagatccttataaggtcataacaaatgctgtcaagtgagtttcacattacttgttttaccttttcaat |
42349325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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