View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8233_high_13 (Length: 336)
Name: NF8233_high_13
Description: NF8233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8233_high_13 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 1658903 - 1659226
Alignment:
| Q |
19 |
agttactatacaatacatatcagttacttaaagaccaagaaactagggaagaatttctaactgactgaaccacaatggttgaatatgattcaattcaaat |
118 |
Q |
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| T |
1658903 |
agttactatacaatacatatcagttacttaaagaccaagaaactagggaagaatttctaactgactgaaccacaatggttgaatatgattcaatccaaat |
1659002 |
T |
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| Q |
119 |
atgataccaatttttggaataagcaatctctatggctctactaacaacagaaaactcagcatagaagacaaaacctctatcaatattctcagcaaaacaa |
218 |
Q |
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| T |
1659003 |
atgataccaatttttggaataagcaatctctatggctctactaacaacagaaaactccgcatagaagacaaaacctctatcaacattctcagcaaaacaa |
1659102 |
T |
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| Q |
219 |
tagaggaaattggctttcatgatttctaaaaatacctcaac------aagaagaagcagcagttgcagccccatttcctgttgcgcttgatcaatctagc |
312 |
Q |
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| T |
1659103 |
tagaggaaattggctttcatgatttctaaaaatacctcaacaagaagaagaagaagcagcagttgcagccccatttcctgttgcacttgatcaatctagc |
1659202 |
T |
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| Q |
313 |
taggggtgtatgccaaatgacctc |
336 |
Q |
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|||||| ||||||||||||||||| |
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| T |
1659203 |
taggggagtatgccaaatgacctc |
1659226 |
T |
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