View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8233_high_16 (Length: 325)
Name: NF8233_high_16
Description: NF8233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8233_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 8 - 312
Target Start/End: Original strand, 3482394 - 3482690
Alignment:
| Q |
8 |
gtgtgctacgatatttatagtttataattcacgtgggtaaatgagtgcctttgtgatattgtttaaagaactaaaagaagtaagtttgcatnnnnnnnng |
107 |
Q |
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| T |
3482394 |
gtgtgctacaatatttatagtttataattcatgtgggtaaatgagtgcctttgtgatattgtttaaagaattaaaagaagtaagtttgcataaaagaatg |
3482493 |
T |
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| Q |
108 |
tgtactttgacaataataacattttatatttctaagacatttttcattgtagaactcattagcaaaatctttaaataaaactgtacagcacaaattatat |
207 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3482494 |
tgtactttgacaataataacattttatattt-----acatttttcattgtagaactcattagcaaaatctttaaataaaactgtacagcacaaat--tat |
3482586 |
T |
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| Q |
208 |
gtttactttggacgccttnnnnnnngttcaatgaannnnnnnnnccatgatgacttttggatggggttttcgactctatttacttgtgatctttaccacc |
307 |
Q |
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|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3482587 |
gtttactttggacgccttaaaaaaagttcaatgaa-atttttttccatgatgacttttggatggggttttcgactctatttacttgtgatctttaccacc |
3482685 |
T |
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