View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8233_high_17 (Length: 285)
Name: NF8233_high_17
Description: NF8233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8233_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 43664058 - 43664313
Alignment:
| Q |
16 |
tgaacaaataataacacaagattagtgttagtttaacttgcattgcataaagtttcttgactttttgctttgtaaattttaagcacttttagtaactatt |
115 |
Q |
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| T |
43664058 |
tgaacaaataataacacaagattagtgttagtttaacttgcattgcataaagtttcttgacttt----------aattttaagcacttttagtaactatt |
43664147 |
T |
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| Q |
116 |
ctctctttaggaaagaaatggataataattgaagaa----------acagattttggacttcaaaagaaagagcatcacgagaaagctaaactgctgtca |
205 |
Q |
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| T |
43664148 |
ctctctttaggaaagaaatgaataataattgaagaacattaaagaaacagattt-ggacttcaaaacaaagaacatcacgagaaagctaaactgctgtca |
43664246 |
T |
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| Q |
206 |
ggaaattgcaactcaaaagtgaatgaattaaattcaatcactgtaaataaaatagaacctcaaacat |
272 |
Q |
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| T |
43664247 |
ggaaattgcaactcaaaagtgaatgaattaaattcaatcactgtaaataaaatagaacctcaaacat |
43664313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 24559874 - 24559738
Alignment:
| Q |
16 |
tgaacaaataataacacaagattagtgttagtttaacttgcattgcataaagtttcttgactttttgctttgtaaattttaagcacttttagtaactatt |
115 |
Q |
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| T |
24559874 |
tgaacaaataataacacaagattagtgttagtttaacttgcattgtataaagtttcttgactttttgctttgtaaattttaagcacttttagtaactatt |
24559775 |
T |
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| Q |
116 |
ctctctttaggaaagaaatggataataattgaagaaa |
152 |
Q |
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| T |
24559774 |
ctctctttaggaaagaaatgaataataattgaagaaa |
24559738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 19138512 - 19138577
Alignment:
| Q |
58 |
ttgcataaagtttcttgactttttgctttgtaaattttaagcacttttagtaactattctctcttt |
123 |
Q |
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| T |
19138512 |
ttgcataaagttactttactttttgctttgtaaattttaagcacttttagtaactattctctcttt |
19138577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 197 - 272
Target Start/End: Complemental strand, 51815461 - 51815386
Alignment:
| Q |
197 |
ctgctgtcaggaaattgcaactcaaaagtgaatgaattaaattcaatcactgtaaataaaatagaacctcaaacat |
272 |
Q |
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| T |
51815461 |
ctgctgtcaggaaattgcaactcaaaagtgaatgaaataaattcaatcattgtacatgaagtatgacctcaaacat |
51815386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 152
Target Start/End: Complemental strand, 51815564 - 51815510
Alignment:
| Q |
98 |
gcacttttagtaactattctctctttaggaaagaaatggataataattgaagaaa |
152 |
Q |
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| T |
51815564 |
gcacttttattaactcttctctctttaggaaagaaatggataatagttgaagaaa |
51815510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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