View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8233_high_19 (Length: 283)
Name: NF8233_high_19
Description: NF8233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8233_high_19 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 273
Target Start/End: Original strand, 105743 - 105996
Alignment:
| Q |
20 |
actggatcagcaattcaagctttagttttgttcaagaagctatatccagggcataggaagaaagagatagagaatttcatctccgaggcagttcgtttca |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
105743 |
actggatcagcaattcaagctttagttttgttcaagaagctatatccagggcataggaagaaagagatagagaatttcatctccgaggcagttcgattca |
105842 |
T |
|
| Q |
120 |
ttgaagatatacaaacagccgatggttcatggtatggaaactggggagtttgcttcacttatggttcttggtttgctcttggtggtttagcagctgctgg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
105843 |
ttgaagatatacaaacagccgatggttcatggtatggaaactggggagtttgcttcacttatggttcttggtttgctcttggtggtttagcagctgctgg |
105942 |
T |
|
| Q |
220 |
caagacttataccaattgcgctgctattcgcaaagctgttaaatttcttctcac |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
105943 |
caagacttataccaattgcgctgctattcgcaaagctgttaaatttcttctcac |
105996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 32 - 270
Target Start/End: Original strand, 166292 - 166530
Alignment:
| Q |
32 |
attcaagctttagttttgttcaagaagctatatccagggcataggaagaaagagatagagaatttcatctccgaggcagttcgtttcattgaagatatac |
131 |
Q |
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|||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
166292 |
attcaagctttaattttgtttaagaaactatatccagggcataggaagaaagagatagagaatttcatctccgaggcagttcgattcattgaagatatac |
166391 |
T |
|
| Q |
132 |
aaacagccgatggttcatggtatggaaactggggagtttgcttcacttatggttcttggtttgctcttggtggtttagcagctgctggcaagacttatac |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
166392 |
aaacagccgatggttcatggtatggaaactggggagtttgctttacttatggttgttggtttgctcttggtggtttagcagctgctggaaagacttatac |
166491 |
T |
|
| Q |
232 |
caattgcgctgctattcgcaaagctgttaaatttcttct |
270 |
Q |
| |
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|||||| ||| | |||||||| ||||||||||||||||| |
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| T |
166492 |
caattgtgctacgattcgcaaggctgttaaatttcttct |
166530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 36 - 273
Target Start/End: Complemental strand, 91012 - 90775
Alignment:
| Q |
36 |
aagctttagttttgttcaagaagctatatccagggcataggaagaaagagatagagaatttcatctccgaggcagttcgtttcattgaagatatacaaac |
135 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| || || || || | |||||||| ||| ||||||||| ||||| |
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| T |
91012 |
aagctttagttttgttcaagaagctatatccagggcataggaagaacgagatagataacttgattgccaatgcagttcgattccttgaagatacacaaaa |
90913 |
T |
|
| Q |
136 |
agccgatggttcatggtatggaaactggggagtttgcttcacttatggttcttggtttgctcttggtggtttagcagctgctggcaagacttataccaat |
235 |
Q |
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| | ||||||||||||||||||| |||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
90912 |
aactgatggttcatggtatggaagttggggaatttgtttcacttatggttcttggttcgctcttggtggtttagcagctgctggcaagaattatactaat |
90813 |
T |
|
| Q |
236 |
tgcgctgctattcgcaaagctgttaaatttcttctcac |
273 |
Q |
| |
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|| | ||||||||| ||||||||||||||||||||||| |
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| T |
90812 |
tgtgatgctattcgtaaagctgttaaatttcttctcac |
90775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 20 - 273
Target Start/End: Complemental strand, 12136151 - 12135898
Alignment:
| Q |
20 |
actggatcagcaattcaagctttagttttgttcaagaagctatatccagggcataggaagaaagagatagagaatttcatctccgaggcagttcgtttca |
119 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||| || || | ||||||| | | |
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| T |
12136151 |
actggatcggcaattcaagctttagttttgttcaagaaattatatccagagcataggaagaaagagatagacgattttattgccaatgcagttcaatacc |
12136052 |
T |
|
| Q |
120 |
ttgaagatatacaaacagccgatggttcatggtatggaaactggggagtttgcttcacttatggttcttggtttgctcttggtggtttagcagctgctgg |
219 |
Q |
| |
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| ||||||| ||||||| | |||||||||||||||||| ||||| ||||||||| ||||||||||||||| || ||||||||||||||||||||||| |
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| T |
12136051 |
tagaagataaacaaacatctgatggttcatggtatggagcttggggtatttgcttcatttatggttcttggttggcacttggtggtttagcagctgctgg |
12135952 |
T |
|
| Q |
220 |
caagacttataccaattgcgctgctattcgcaaagctgttaaatttcttctcac |
273 |
Q |
| |
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||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
12135951 |
aaagacttataccaattgtgctgctattcgcaaagcagttaaatttcttctcac |
12135898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 13054220 - 13054471
Alignment:
| Q |
20 |
actggatcagcaattcaagctttagttttgttcaagaagctatatccagggcataggaagaaagagatagagaatttcatctccgaggcagttcgtttca |
119 |
Q |
| |
|
|||||| | |||||||||||||||||| ||||||| ||||||||||||| |||||||||||| ||||||||||||||||| | | |||||| | |||| |
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| T |
13054220 |
actggaccggcaattcaagctttagttatgttcaataagctatatccagagcataggaagaacgagatagagaatttcattgacaatgcagttagattca |
13054319 |
T |
|
| Q |
120 |
ttgaagatatacaaacagccgatggttcatggtatggaaactggggagtttgcttcacttatggttcttggtttgctcttggtggtttagcagctgctgg |
219 |
Q |
| |
|
||||||||| ||||| || ||||||||||||||||||| |||||| ||||||||| ||||||| ||| ||||||||||| ||||||||||||||||| |
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| T |
13054320 |
ttgaagatacacaaaaagatgatggttcatggtatggaagttggggaatttgcttcatttatggtacttattttgctcttggaggtttagcagctgctgg |
13054419 |
T |
|
| Q |
220 |
caagacttataccaattgcgctgctattcgcaaagctgttaaatttcttctc |
271 |
Q |
| |
|
|||||||||| ||||| | || ||||| ||||||||| ||||||||||| |
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|
| T |
13054420 |
aaagacttatagcaattctgttgtgattcgtaaagctgttcaatttcttctc |
13054471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 25 - 267
Target Start/End: Complemental strand, 5719806 - 5719564
Alignment:
| Q |
25 |
atcagcaattcaagctttagttttgttcaagaagctatatccagggcataggaagaaagagatagagaatttcatctccgaggcagttcgtttcattgaa |
124 |
Q |
| |
|
|||| ||||||||||| | |||||||| || || ||||||| | |||||| ||| |||| ||||||||||||| | | ||||||| ||| ||||| |
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|
| T |
5719806 |
atcatcaattcaagctatggttttgtttaaaaaaatatatcccgagcatagaaaggaagaagtagagaatttcattgcaaaagcagttcaattccttgaa |
5719707 |
T |
|
| Q |
125 |
gatatacaaacagccgatggttcatggtatggaaactggggagtttgcttcacttatggttcttggtttgctcttggtggtttagcagctgctggcaaga |
224 |
Q |
| |
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|||| ||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||| || ||||||| |
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| T |
5719706 |
gataaacaaacaagtgatggttcatggtatggaaattggggaatttgcttcacttatggttcttggtttgctcttggtggtctagcagtcgcgggcaaga |
5719607 |
T |
|
| Q |
225 |
cttataccaattgcgctgctattcgcaaagctgttaaatttct |
267 |
Q |
| |
|
||||| ||||| | ||| ||||||||||||||||||||||| |
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|
| T |
5719606 |
cttatgagaattgtgttgcaattcgcaaagctgttaaatttct |
5719564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 32 - 267
Target Start/End: Complemental strand, 5687683 - 5687448
Alignment:
| Q |
32 |
attcaagctttagttttgttcaagaagctatatccagggcataggaagaaagagatagagaatttcatctccgaggcagttcgtttcattgaagatatac |
131 |
Q |
| |
|
||||||||| | |||||||| || || ||||||| | |||||| ||| |||| ||||||||||||| | | |||||| ||| ||||||||| || |
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|
| T |
5687683 |
attcaagctatggttttgtttaaaaaattatatcccgagcatagaaaggaagaagtagagaatttcattgcaaaagcagttaaattccttgaagataaac |
5687584 |
T |
|
| Q |
132 |
aaacagccgatggttcatggtatggaaactggggagtttgcttcacttatggttcttggtttgctcttggtggtttagcagctgctggcaagacttatac |
231 |
Q |
| |
|
||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||| || |||| || |||||||||||| |
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|
| T |
5687583 |
aaacaagtgatggttcatggtatggaaattggggaatttgcttcacttatggttcttggtttgctcttggcggtctaacagccgccggcaagacttatga |
5687484 |
T |
|
| Q |
232 |
caattgcgctgctattcgcaaagctgttaaatttct |
267 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
5687483 |
gaattgtgctgcaattcgcaaagctgttaaatttct |
5687448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 25 - 267
Target Start/End: Complemental strand, 5666620 - 5666378
Alignment:
| Q |
25 |
atcagcaattcaagctttagttttgttcaagaagctatatccagggcataggaagaaagagatagagaatttcatctccgaggcagttcgtttcattgaa |
124 |
Q |
| |
|
|||| ||||||||||| | |||||||| || || ||||||| | |||||| ||| |||| ||||||||||||| | | |||||| ||| ||||| |
|
|
| T |
5666620 |
atcatcaattcaagctatggttttgtttaaaaaaatatatcccgagcatagaaaggaagaagtagagaatttcattgcaaaagcagttaaattccttgaa |
5666521 |
T |
|
| Q |
125 |
gatatacaaacagccgatggttcatggtatggaaactggggagtttgcttcacttatggttcttggtttgctcttggtggtttagcagctgctggcaaga |
224 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||| || |||| || || |||| |
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|
| T |
5666520 |
gataaacaaacaagtgatggttcatggtatggaaattggggaatttgcttcacttatggttcttggtttgctcttggcggtctaacagccgccggtaaga |
5666421 |
T |
|
| Q |
225 |
cttataccaattgcgctgctattcgcaaagctgttaaatttct |
267 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
5666420 |
cttatgagaattgtgctgcaattcgcaaagctgttaaatttct |
5666378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 5653078 - 5652910
Alignment:
| Q |
20 |
actggatcagcaattcaagctttagttttgttcaagaagctatatccagggcataggaagaaagagatagagaatttcatctccgaggcagttcgtttca |
119 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||| | | || ||||||||||| |||||||| | | || ||||| |||| |
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| T |
5653078 |
actggatcagcaattcaagccttagttttgtttaagaagctatatccagaatacaagacaaaagagatagataatttcattgcaaatgcggttcgattca |
5652979 |
T |
|
| Q |
120 |
ttgaagatatacaaacagccgatggttcatggtatggaaactggggagtttgcttcacttatggttctt |
188 |
Q |
| |
|
||||| | ||||||| |||||||||||||||||| || |||||| ||||||||| ||||||||||| |
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|
| T |
5652978 |
ttgaatcttcacaaacaatcgatggttcatggtatgggaattggggaatttgcttcatttatggttctt |
5652910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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