View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8233_high_22 (Length: 241)
Name: NF8233_high_22
Description: NF8233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8233_high_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 43261659 - 43261882
Alignment:
| Q |
1 |
tcccactcttctggtaagccttgtttggtagtcgtaaataattatttctggaatagcttaattcagaatctgatgtaataaataatgaaggctttcaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
43261659 |
tcccactcttctggtaagccttgtttggtagtcgtaaataattatttctggaatagcttaattcagaatctgttgtaataaataatgaaggctttcaaga |
43261758 |
T |
|
| Q |
101 |
gagcagcggaatcacttgaaaagcttatggatacagcaagagaggaacttcctgatacaatggctgcaattcgattatctggcatggaaatcagtgactt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43261759 |
gagcagcggaatcacttgaaaagcttatggatacagcaagagaggaacttcctgatacaatggctgcaattcgattatctggcatggaaatcagtgactt |
43261858 |
T |
|
| Q |
201 |
aaccactcaactcagtgatcttgg |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
43261859 |
aaccactcaactcagtgatcttgg |
43261882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University