View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8233_high_3 (Length: 531)
Name: NF8233_high_3
Description: NF8233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8233_high_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 7 - 531
Target Start/End: Original strand, 8524986 - 8525510
Alignment:
| Q |
7 |
ggagtagcagagaatacagtaacgaacccgagtaatgtcttgagaaatgccttcaccaccctgatcccccacattaatagtcccaagaaccacactgtgt |
106 |
Q |
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| T |
8524986 |
ggagaagcaaagaatacagtaacgaacccgagtaatgtcttgagaaatgccttcaccaccctgatcccccacattaatagtcccaagaaccacactgtgt |
8525085 |
T |
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| Q |
107 |
gaaatttgcccaacacggctacgtggagctcctgaaccaacattgtttcctttcaaatgataaaatttatcatcagcatttagcacaatacaacttgatc |
206 |
Q |
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| T |
8525086 |
gaaatttgcccaacacggctacgtggagctcctgaaccaacattgtttcctttcaaatgataaaatttatcatcagcatttagcacaatacaacttgatc |
8525185 |
T |
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| Q |
207 |
tatgaaaaagcctcgatcaaacgggggagtgcaaatgactaggttatacctcggttactatttgcattagttgtctcactgccggacccggtagcagaag |
306 |
Q |
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| T |
8525186 |
tatgaaaaagcctcgatcaaacgggggagtgcaaatgactaggttatacctcggttactatttgcattagttgtctcactgccggacccggtagcagacg |
8525285 |
T |
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| Q |
307 |
tctgtgtctgatttggctgtctttcaaccaaatgcaatgtatggccattctcaacatctttagtggataaggatggcggcgtgatttaaaataatgagcc |
406 |
Q |
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| T |
8525286 |
tctgtgtctgatttggctgtctttcaaccaaatgcaatgtatggccattctcaacatctttagtggataaggatggcggtgtgatttaaaataatgagcc |
8525385 |
T |
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| Q |
407 |
attttatgatacatgaaattctactagatggcatatcatattcttgaacctaggaatccacaaatttaaaagctcaagtaataaataaataaataaatag |
506 |
Q |
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| T |
8525386 |
attttatgatacatgaaattctactagatggcatatcatattcttgaacctaggaatacacaaatttaaaagctaaagtaataaataaataaataaatag |
8525485 |
T |
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| Q |
507 |
agagatggtgttaataaaaggatac |
531 |
Q |
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| T |
8525486 |
agagatggtgttaataaaaggatac |
8525510 |
T |
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