View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8233_low_1 (Length: 627)

Name: NF8233_low_1
Description: NF8233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8233_low_1
NF8233_low_1
[»] chr7 (4 HSPs)
chr7 (5-581)||(5178993-5179566)
chr7 (55-108)||(22845041-22845094)
chr7 (60-108)||(42233252-42233300)
chr7 (59-108)||(21068983-21069032)
[»] chr8 (8 HSPs)
chr8 (5-412)||(5185301-5185710)
chr8 (5-391)||(6231811-6232201)
chr8 (5-412)||(1795305-1795705)
chr8 (221-409)||(5179352-5179537)
chr8 (264-384)||(5056638-5056757)
chr8 (334-412)||(29798225-29798299)
chr8 (59-108)||(21112654-21112703)
chr8 (110-155)||(5058903-5058948)
[»] chr2 (6 HSPs)
chr2 (57-108)||(27510633-27510684)
chr2 (59-108)||(27193733-27193782)
chr2 (59-108)||(27843547-27843596)
chr2 (61-108)||(3643125-3643172)
chr2 (60-108)||(35610915-35610963)
chr2 (59-100)||(24267988-24268029)
[»] chr5 (8 HSPs)
chr5 (55-108)||(3691231-3691284)
chr5 (55-108)||(3875503-3875556)
chr5 (55-108)||(17870566-17870619)
chr5 (59-108)||(10026238-10026287)
chr5 (59-108)||(25541703-25541752)
chr5 (59-100)||(24628878-24628919)
chr5 (59-100)||(30345561-30345602)
chr5 (60-108)||(14191720-14191768)
[»] scaffold0356 (2 HSPs)
scaffold0356 (57-108)||(15958-16009)
scaffold0356 (57-108)||(16877-16928)
[»] scaffold0003 (1 HSPs)
scaffold0003 (57-108)||(184068-184119)
[»] chr6 (3 HSPs)
chr6 (57-108)||(18857795-18857846)
chr6 (55-108)||(30882563-30882616)
chr6 (59-108)||(15334557-15334606)
[»] chr4 (2 HSPs)
chr4 (57-108)||(14146459-14146510)
chr4 (59-108)||(55558033-55558082)
[»] chr3 (5 HSPs)
chr3 (57-108)||(11369898-11369949)
chr3 (59-108)||(10001668-10001717)
chr3 (59-108)||(27275656-27275705)
chr3 (59-108)||(10111860-10111909)
chr3 (59-108)||(10245545-10245594)
[»] chr1 (4 HSPs)
chr1 (57-108)||(2330426-2330477)
chr1 (57-108)||(48774293-48774344)
chr1 (55-108)||(36208474-36208527)
chr1 (59-100)||(52501831-52501872)
[»] scaffold1139 (1 HSPs)
scaffold1139 (57-108)||(2274-2325)
[»] scaffold0262 (1 HSPs)
scaffold0262 (59-108)||(20264-20313)
[»] scaffold0225 (1 HSPs)
scaffold0225 (59-108)||(13204-13253)
[»] scaffold0118 (2 HSPs)
scaffold0118 (59-108)||(27629-27678)
scaffold0118 (59-108)||(24437-24486)
[»] scaffold0029 (1 HSPs)
scaffold0029 (59-108)||(141174-141222)
[»] scaffold0002 (1 HSPs)
scaffold0002 (59-108)||(318641-318689)
[»] scaffold0017 (1 HSPs)
scaffold0017 (60-108)||(187804-187852)


Alignment Details
Target: chr7 (Bit Score: 476; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 5 - 581
Target Start/End: Original strand, 5178993 - 5179566
Alignment:
Q  5 agtttggtgttacctcttaaatgcatgatgccgcatttgttttgatacactatggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttc 104  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5178993 agtttgatgttacctcttaaatgcatgatgccacatttgttttgatacactatggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttc 5179092  T
Q  105 tttattattggctttacttattagtcgttctttattatcttccaatgattgataactagttattatgattcacatttcgcatcttccaaacaaggacctt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5179093 tttattattggctttacttattagtcgttctttattatcttccaatgattgataactacttattatgattcacatttcgcatcttccaaacaaggacctt 5179192  T
Q  205 cttgctgatttccatttcaccataacatttttggatataactcatttccaacttctccatgcaatgatccctttaagttgatttt-ttctacaaaagctg 303  Q
    || ||||||||||||||   || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5179193 ct-gctgatttccattttgtcagaacatttttggatataactcatttccaacttctccatgcaatgatccctttaagttgatttttttctacaaaagctg 5179291  T
Q  304 catgatcttcgtatctatgggaattactaccttgcaatgttttcaagctgtctactgaaatatctttattttcttccttcattgatttaaaattcgtatc 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5179292 catgatcttcgtatctatgggaattactaccttgcaatgttttcaagctgtctactgaaatatctttattttcttccttcattgatttaaaattcgtatc 5179391  T
Q  404 tttaaccgacggtacaatagtttcatacaaaagtatggtggacaatacagtataatgaatcttatcaagttagatggatggacggannnnnnnnnnnnnn 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||                  
T  5179392 tttaaccgacggtacaatagtttcatacaaaagtatggtggacaatacactataatgaatcttatcaagttagatggatggacgga----tttttttttt 5179487  T
Q  504 ctaacccaattaactaacaaggtactaattaatgaacgtctaattatgttttccttttcaaaagtatggt-ctaattaa 581  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5179488 ctaacccaattaactaacaaggtactaattaatgaacgtctaattatgttttccttttcaaaagtatggtactaattaa 5179566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 22845041 - 22845094
Alignment:
Q  55 tatggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||||||| ||||| || |||||||||||||||||||||||||||||||||    
T  22845041 tatggaaaatgttgaatggtgtcgtagagttagtaactcttagtttgttcttta 22845094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 42233252 - 42233300
Alignment:
Q  60 aaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    |||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  42233252 aaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 42233300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 21069032 - 21068983
Alignment:
Q  59 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||| |||||  ||||||||||||||||||||||||||| |||||||    
T  21069032 gaaaatgttgaatgatatcgtagagttagtaactcttagttttttcttta 21068983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 5 - 412
Target Start/End: Original strand, 5185301 - 5185710
Alignment:
Q  5 agtttggtgttacctcttaaatgcatgatgccgcatttgttttgata--cactatggaaaatgctgaatagtatcgtagagttagtaactcttagtttgt 102  Q
    |||||| ||||||||||||||||||  ||| | ||||||||||||||  |||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  5185301 agtttgatgttacctcttaaatgcacaatgacacatttgttttgatatacactatggaaaatgctgaacggtatcgtagagttagtaactcttagtttgt 5185400  T
Q  103 tctttattattggctttacttattagtcgttctttattatcttccaatgattgataactagttattatgattcacatttcgcatcttccaaacaaggacc 202  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||| ||||||||    
T  5185401 tctttattattggctttacttatttgtagttctttattatcttccaatgattgataactagttattgtgattcgcattttgcatcttccaagcaaggacc 5185500  T
Q  203 ttcttgctgatttccatttcaccataacatttttggatataactcatttccaacttctccatgcaatgatccctttaagttgattttttctacaaaagct 302  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  5185501 ttcttgctgatttccattttaccataacatttttggatataactcatttccaacttctcaatgcagtgatccctttaagttgattttttctacaaaagct 5185600  T
Q  303 gcatgatcttcgtatctatgggaattactaccttgcaatgttttcaagctgtctactgaaatatctttattttcttccttcattgatttaaaattcgtat 402  Q
    |||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||    
T  5185601 gcatgatcttcgtatcaatgggcattgctaccttgcaatgttttcaagctgtctactgaaatatttttagtttcttccttcattgatttaaaatttgtat 5185700  T
Q  403 ctttaaccga 412  Q
    ||||||||||    
T  5185701 ctttaaccga 5185710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 5 - 391
Target Start/End: Original strand, 6231811 - 6232201
Alignment:
Q  5 agtttggtgttacctcttaaatgcatgatgccgcatttgttttgata---cactatggaaaatgctgaatagtatcgtagagttagtaactctta--gtt 99  Q
    |||||| | ||||||||||||||||||||| | |||||||| |||||   ||||||||||||| ||||   ||||||||||||||||| ||||||  |||    
T  6231811 agtttgatattacctcttaaatgcatgatgacacatttgttatgatataacactatggaaaattctgagcggtatcgtagagttagtagctcttatagtt 6231910  T
Q  100 tgttctttattattggctttacttattagtcgttctttattatcttccaatgattgataactagttattatgattcacatttcgcatcttccaaacaagg 199  Q
    ||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||    
T  6231911 tgttctttattattggctttacttatttgtagttatttattatcttccaatgattgataactagttattgtgattcgcatttcgcatcttccaagcaagg 6232010  T
Q  200 accttcttgctgatttccatttcaccataacatttttggatataactcatttccaacttctccatgcaatgatccctttaagttgattttttctacaaaa 299  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  6232011 accttct-gctgatttccatttcaccataacatttttggatataactcatttccaacttctccatgcagtgatcccttcaagttgattttttctacaaaa 6232109  T
Q  300 gctgcatgatcttcgtatctatgggaattactaccttgcaatgttttcaagctgtctactgaaatatctttattttcttccttcattgattt 391  Q
    ||||||||||||| ||||| ||||| ||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  6232110 gctgcatgatctttgtatcaatgggcattgctaccttgcaatgttttcaagctgtctactgaaatatttttagtttcttccttcattgattt 6232201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 5 - 412
Target Start/End: Complemental strand, 1795705 - 1795305
Alignment:
Q  5 agtttggtgttacctcttaaatgcatgatgccgcatttgttttgata--cactatggaaaatgctgaatagtatcgtagagttagtaactcttagtttgt 102  Q
    |||||| ||||||||||||||||||||||| | | ||| ||||||||  ||||| |||||||| ||||  ||||||||||| ||||||||||||||||||    
T  1795705 agtttgatgttacctcttaaatgcatgatgacacctttcttttgatatacactacggaaaatgatgaacggtatcgtagagatagtaactcttagtttgt 1795606  T
Q  103 tctttattattggctttacttattagtcgttctttattatcttccaatgattgataactagttattatgattcacatttcgcatcttccaaacaaggacc 202  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| | |||||| |||||||| |||||||| ||||||||    
T  1795605 tctttattattggctttacttatttgtagttctttattatcttccaatgattgataactagttaatgtgattcgcatttcgcttcttccaagcaaggacc 1795506  T
Q  203 ttcttgctgatttccatttcaccataacatttttggatataactcatttccaacttctccatgcaatgatccctttaagttgattttttctacaaaagct 302  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| ||  ||  |   ||||||||||||||||||||||||||||||||||||| ||    
T  1795505 ttc-tgctgatttccatttcaccataacatttttggatataactcatctc--ac--catgatgcaatgatccctttaagttgattttttctacaaaaact 1795411  T
Q  303 gcatgatcttcgtatctatgggaattactaccttgcaatgttttcaagctgtctactgaaatatctttattttcttccttcattgatttaaaattcgtat 402  Q
    |||||| |||| | |||| ||| |||||| ||||| ||||||||||||||||||  ||||  |    |||||||| ||||||||||| | ||||||||||    
T  1795410 gcatgaccttcatgtctacggggattactgccttgtaatgttttcaagctgtcttttgaacaa---gtattttctaccttcattgatgt-aaattcgtat 1795315  T
Q  403 ctttaaccga 412  Q
    |||| |||||    
T  1795314 ctttgaccga 1795305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 221 - 409
Target Start/End: Original strand, 5179352 - 5179537
Alignment:
Q  221 tcaccataacatttttggatataactcatttccaacttctccatgcaatgatccctttaagttgattttttctacaaaagctgcatgatcttcgtatcta 320  Q
    ||||||||||||||| ||| || ||||||||||| ||||||  || ||||||||||| ||||||||||| ||||||||||||||| ||| |||   |||     
T  5179352 tcaccataacattttcggacatcactcatttccagcttctcagtgtaatgatccctt-aagttgattttgtctacaaaagctgcaagattttcaagtctg 5179450  T
Q  321 tgggaattactaccttgcaatgttttcaagctgtctactgaaatatctttattttcttccttcattgatttaaaattcgtatctttaac 409  Q
     | |  ||||| ||||||||| |||||||||||||| ||||||||| ||||||||||||||||||| ||||||||| ||||||||||||    
T  5179451 agtg--ttactgccttgcaatattttcaagctgtcttctgaaatatttttattttcttccttcatttatttaaaatacgtatctttaac 5179537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 264 - 384
Target Start/End: Complemental strand, 5056757 - 5056638
Alignment:
Q  264 tgcaatgatccctttaagttgattttttctacaaaagctgcatgatcttcgtatctatgggaattactaccttgcaatgttttcaagctgtctactgaaa 363  Q
    |||| ||||||||| || |||||||| ||  |||||||| |||||||||| ||||||||   ||| |||||||| |||||||||||||| ||||||||||    
T  5056757 tgcagtgatcccttaaa-ttgattttgtccgcaaaagctacatgatcttcatatctatgaccattgctaccttgtaatgttttcaagctatctactgaaa 5056659  T
Q  364 tatctttattttcttccttca 384  Q
    ||| | |||||||||||||||    
T  5056658 tatttctattttcttccttca 5056638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 334 - 412
Target Start/End: Original strand, 29798225 - 29798299
Alignment:
Q  334 cttgcaatgttttcaagctgtctactgaaatatctttattttcttccttcattgatttaaaattcgtatctttaaccga 412  Q
    ||||||||||||||||    ||||||||||||| ||||||||||| |||||||||||||||||| ||||||| ||||||    
T  29798225 cttgcaatgttttcaa----tctactgaaatatttttattttcttgcttcattgatttaaaattagtatcttcaaccga 29798299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 21112703 - 21112654
Alignment:
Q  59 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||| ||||| ||||| |||||||||||||||||||||| |||||||    
T  21112703 gaaaatgttgaatggtatcatagagttagtaactcttagttttttcttta 21112654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 5058948 - 5058903
Alignment:
Q  110 tattggctttacttattagtcgttctttattatcttccaatgattg 155  Q
    |||| ||| |||||||| || |||||||||||||||||||||||||    
T  5058948 tattagctatacttatttgtagttctttattatcttccaatgattg 5058903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 27510633 - 27510684
Alignment:
Q  57 tggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27510633 tggaaaatgctgaatggtatcgtagagttagtaactcttagtttgttcttta 27510684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 27193733 - 27193782
Alignment:
Q  59 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27193733 gaaaatgctgaatggtatcgtagagttagtaactcttagtttgttcttta 27193782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 27843547 - 27843596
Alignment:
Q  59 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27843547 gaaaatgctgaatggtatcgtagagttagtaactcttagtttgttcttta 27843596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 3643125 - 3643172
Alignment:
Q  61 aaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||||||| || ||||||||||||||||||||||||||| |||||    
T  3643125 aaatgctgaatggtgtcgtagagttagtaactcttagtttgtccttta 3643172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 35610915 - 35610963
Alignment:
Q  60 aaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||||||||  ||||||| |||||||||||||||||||||| ||||    
T  35610915 aaaatgctgaatgctatcgtacagttagtaactcttagtttgtttttta 35610963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 24268029 - 24267988
Alignment:
Q  59 gaaaatgctgaatagtatcgtagagttagtaactcttagttt 100  Q
    ||||||| ||||| ||||| ||||||||||||||||||||||    
T  24268029 gaaaatgttgaatggtatcatagagttagtaactcttagttt 24267988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 3691231 - 3691284
Alignment:
Q  55 tatggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  3691231 tatggaaaatgttgaatggtatcgtagagttagtaactcttagtttgttcttta 3691284  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 3875556 - 3875503
Alignment:
Q  55 tatggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  3875556 tatggaaaatgttgaatggtatcgtagagttagtaactcttagtttgttcttta 3875503  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 17870619 - 17870566
Alignment:
Q  55 tatggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||||||| ||||| || |||||||||||||||||||||||||||||||||    
T  17870619 tatggaaaatgttgaatggtgtcgtagagttagtaactcttagtttgttcttta 17870566  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 10026238 - 10026287
Alignment:
Q  59 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  10026238 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 10026287  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 25541752 - 25541703
Alignment:
Q  59 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  25541752 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 25541703  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 24628919 - 24628878
Alignment:
Q  59 gaaaatgctgaatagtatcgtagagttagtaactcttagttt 100  Q
    ||||||| ||||| ||||||||||||||||||||||| ||||    
T  24628919 gaaaatgttgaatggtatcgtagagttagtaactcttggttt 24628878  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 30345602 - 30345561
Alignment:
Q  59 gaaaatgctgaatagtatcgtagagttagtaactcttagttt 100  Q
    ||||||| ||||| ||||||| ||||||||||||||||||||    
T  30345602 gaaaatgttgaatggtatcgttgagttagtaactcttagttt 30345561  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 14191768 - 14191720
Alignment:
Q  60 aaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    |||||| |||||  ||||||| ||||||| |||||||||||||||||||    
T  14191768 aaaatgttgaatgctatcgtacagttagtgactcttagtttgttcttta 14191720  T

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Target: scaffold0356 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 16009 - 15958
Alignment:
Q  57 tggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  16009 tggaaaatgcttaatggtatcgtagagttagtaactcttagtttgttcttta 15958  T

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Target: scaffold0356; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 16928 - 16877
Alignment:
Q  57 tggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||||||||||| || ||||||||||||||||||||||||||| |||||    
T  16928 tggaaaatgctgaatggtgtcgtagagttagtaactcttagtttgtccttta 16877  T

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Target: scaffold0003 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 184068 - 184119
Alignment:
Q  57 tggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  184068 tggaaaatgttgaatggtatcgtagagttagtaactcttagtttgttcttta 184119  T

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Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 18857795 - 18857846
Alignment:
Q  57 tggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  18857795 tggaaaatgttgaatggtatcgtagagttagtaactcttagtttgttcttta 18857846  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 30882563 - 30882616
Alignment:
Q  55 tatggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||||||| ||||| || |||||||||||||||||||||||||||||||||    
T  30882563 tatggaaaatgttgaatggtgtcgtagagttagtaactcttagtttgttcttta 30882616  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 15334557 - 15334606
Alignment:
Q  59 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||| ||||| ||||| ||||||||||||| |||||||| |||||||    
T  15334557 gaaaatgttgaatggtatcatagagttagtaacccttagttttttcttta 15334606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 14146510 - 14146459
Alignment:
Q  57 tggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  14146510 tggaaaatgctgaatggtatcggagagttagtaactcttagtttgttcttta 14146459  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 55558082 - 55558033
Alignment:
Q  59 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  55558082 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 55558033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 11369898 - 11369949
Alignment:
Q  57 tggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  11369898 tggaaaatgctgaatggtatcgtggagttagtaactcttagtttgttcttta 11369949  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 10001668 - 10001717
Alignment:
Q  59 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  10001668 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 10001717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 27275656 - 27275705
Alignment:
Q  59 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  27275656 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 27275705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 10111860 - 10111909
Alignment:
Q  59 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||| ||||| |||||||||||||| ||||||||||||| |||||||    
T  10111860 gaaaatgttgaatggtatcgtagagttattaactcttagttttttcttta 10111909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 10245545 - 10245594
Alignment:
Q  59 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||| ||||| |||||||||| ||||||||||||||||| |||||||    
T  10245545 gaaaatgttgaatggtatcgtagatttagtaactcttagttttttcttta 10245594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 2330426 - 2330477
Alignment:
Q  57 tggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  2330426 tggaaaatgttgaatggtatcgtagagttagtaactcttagtttgttcttta 2330477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 48774344 - 48774293
Alignment:
Q  57 tggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||||| | ||| ||||||||||||||||||||||||||||||||||||    
T  48774344 tggaaaatgtttaatggtatcgtagagttagtaactcttagtttgttcttta 48774293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 36208474 - 36208527
Alignment:
Q  55 tatggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    |||| ||||| |||||  ||||| ||||||||||||||||||||||||||||||    
T  36208474 tatgaaaaattctgaacggtatcatagagttagtaactcttagtttgttcttta 36208527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 52501831 - 52501872
Alignment:
Q  59 gaaaatgctgaatagtatcgtagagttagtaactcttagttt 100  Q
    ||||||| ||||| ||||||||||||||||||||||| ||||    
T  52501831 gaaaatgttgaatggtatcgtagagttagtaactcttggttt 52501872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1139 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1139
Description:

Target: scaffold1139; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 2274 - 2325
Alignment:
Q  57 tggaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||||| |||||  |||||||||||||||||||||||||||||||||||    
T  2274 tggaaaatgttgaatgatatcgtagagttagtaactcttagtttgttcttta 2325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 20264 - 20313
Alignment:
Q  59 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  20264 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 20313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 13253 - 13204
Alignment:
Q  59 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  13253 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 13204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 27678 - 27629
Alignment:
Q  59 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  27678 gaaaatgttgaatggtatcgtagagttagtaactcttagttttttcttta 27629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 24486 - 24437
Alignment:
Q  59 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||| ||||| |||| ||||||||||||||||||||||| |||||||    
T  24486 gaaaatgttgaatggtattgtagagttagtaactcttagttttttcttta 24437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 141222 - 141174
Alignment:
Q  59 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||| ||||| ||||||||||||||||||||||||| ||||||||||    
T  141222 gaaaatgttgaatggtatcgtagagttagtaactcttag-ttgttcttta 141174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 318689 - 318641
Alignment:
Q  59 gaaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    ||||||| ||||| ||||||||||||||||||||||||| ||||||||||    
T  318689 gaaaatgttgaatggtatcgtagagttagtaactcttag-ttgttcttta 318641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 187804 - 187852
Alignment:
Q  60 aaaatgctgaatagtatcgtagagttagtaactcttagtttgttcttta 108  Q
    |||||| ||||| ||||||||||||||| |||||||||||| |||||||    
T  187804 aaaatgttgaatggtatcgtagagttagcaactcttagttttttcttta 187852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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