View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8233_low_11 (Length: 402)
Name: NF8233_low_11
Description: NF8233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8233_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 9e-83; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 207 - 385
Target Start/End: Original strand, 39410296 - 39410475
Alignment:
| Q |
207 |
ataggaacatgttcatattcacgtgtaacttgagtattaatcttctctgtttttccattagaaagtgatcgtattacatgaccaaagtcataacttaccc |
306 |
Q |
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| T |
39410296 |
ataggaacatgttcatattcacgtgtaacttgagtattaatcttctctgtttttccattagaaagtgatcgtattacatgaccaaaatcataacttaccc |
39410395 |
T |
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| Q |
307 |
ttaatacgatgcatctaaaccaagcttcttgaaatacacaaattcagtct-tcttcttgggaaaaaaggttacacttttt |
385 |
Q |
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| T |
39410396 |
ttaatacgatgcatctaaaccaagcttcttgaaatacataaaatcagtctctcttcttgggaaaaaaggttacagttttt |
39410475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 39411954 - 39411882
Alignment:
| Q |
133 |
attatctctgtttcttggctttctagtgtttctttctcatgtattttaaatctccataggcttaaatatgtta |
205 |
Q |
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| T |
39411954 |
attatctctgtttcttggctttctagtctttctttctcatgtattttaaatctccataggcttaaatatgtta |
39411882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 125 - 261
Target Start/End: Original strand, 39157080 - 39157216
Alignment:
| Q |
125 |
ttaacaggattatctctgtttcttggctttctagtgtttctttctcatgtattttaaatctccat-aggcttaaatatgttatataggaacatgttcata |
223 |
Q |
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| T |
39157080 |
ttaacaggattatcactatttcttggcttcataatctttctttctcttgtattttaaattatcaggaggcttaaatttgt-atgtaaaaacatgttcata |
39157178 |
T |
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| Q |
224 |
ttcacgtgtaacttgagtattaatcttctctgtttttc |
261 |
Q |
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| T |
39157179 |
ttcacatgtaacttgagcattgatcttctctgtttttc |
39157216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 39412001 - 39411950
Alignment:
| Q |
33 |
agtagtaatatttatgttagcaggtttccataaccgcatttctttacattat |
84 |
Q |
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| T |
39412001 |
agtagtagtatttatgttagcaggtttccataaccacatttctttacattat |
39411950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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