View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8233_low_12 (Length: 400)
Name: NF8233_low_12
Description: NF8233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8233_low_12 |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: scaffold0280 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 20 - 386
Target Start/End: Original strand, 8866 - 9230
Alignment:
| Q |
20 |
gtcgaaaaattcccgctaagcattccccaaatgcaaatataaagtcaaatttctcattctcataatcacttacacgcttcaaagaaagaggttcacactt |
119 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8866 |
gtcgaaaaatccccgctaagcattccccaaatgcaaatataaagtaaaatttctcattctcataatcacttaa--gcttcaaagaaagaggttcacactt |
8963 |
T |
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| Q |
120 |
ttagtgtttctttctccatcaccaaaaatggaagaagggttaatatcagtagatcgttggggaaagggtagtgaagcatacttcttaacacatcttcatt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8964 |
ttagtgtttctttctccatcaccaaaaatggaagaagggttaatatcagtagatcgttggggaaagggtagtgaagcatacttcttaacacatcttcatt |
9063 |
T |
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| Q |
220 |
ccgatcacactaaaggtctctcttctaaatggtcacatggcccactcttctgctctccaatcaccgcaagactacttcccatcaaatttcccaatttcaa |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9064 |
ccgatcacactaaaggtctctcttctaaatggtcacatggcccactcttctgctctccaatcaccgccagactacttcccatcaaatttcccaatttcaa |
9163 |
T |
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| Q |
320 |
tctctcccttcttcgcattcttcatactggcacttctcacactctctcactccgttcgccttcttct |
386 |
Q |
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| T |
9164 |
tctctcccttcttcgcattcttcatactggcacttctcacactctctcactccgttcgccttcttct |
9230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 25 - 386
Target Start/End: Original strand, 21909262 - 21909630
Alignment:
| Q |
25 |
aaaattcccgc-taagcattccccaaatgcaaatataaagtcaaatttctcattctcataatcacttacacgcttcaaagaaagaggttcacactttt-- |
121 |
Q |
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||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||| | ||||||||||||||||||||||| |
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| T |
21909262 |
aaaattcccgcctaagcattccccaaataaaaatataaaagaaaatttctcattctcatcatcacttacactc--caaagaaagaggttcacactttttt |
21909359 |
T |
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| Q |
122 |
------agtgtttctttctccatcaccaaaaatggaagaagggttaatatcagtagatcgttggggaaagggtagtgaagcatacttcttaacacatctt |
215 |
Q |
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||||||||||||||| ||||||||||||||||| || |||||||| ||||||||||||| || || ||||||||||| ||||||||||||||| |
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| T |
21909360 |
aacagcagtgtttctttctccgtcaccaaaaatggaagatggtttaatatcggtagatcgttgggcaagaggaagtgaagcatatttcttaacacatctt |
21909459 |
T |
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| Q |
216 |
cattccgatcacactaaaggtctctcttctaaatggtcacatggcccactcttctgctctccaatcaccgcaagactacttcccatcaaatttcccaatt |
315 |
Q |
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|| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||| |
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| T |
21909460 |
cactccgatcacactaaaggcctttcttctaaatggtcacatggcccactcttctgctctccaatcaccgccagactacttccaatcaaattccccaatt |
21909559 |
T |
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| Q |
316 |
tcaatctctcccttcttcgcattcttcatactggcacttctcacactctctcactccgttcgccttcttct |
386 |
Q |
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|||||||||| ||||| |||||||||||||||||||| || |||||| ||||||||||||| ||||||||| |
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| T |
21909560 |
tcaatctctctcttctccgcattcttcatactggcacctcccacactatctcactccgttcaccttcttct |
21909630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 26727884 - 26727951
Alignment:
| Q |
24 |
aaaaattcccgctaagcattccccaaatgcaaatataaagtcaaatttctcattctcataatcactta |
91 |
Q |
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|||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||| |||||||| |
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| T |
26727884 |
aaaaattcccgctaagcattccccaaatacaaatataaaataaaatttctcattctcatcatcactta |
26727951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 320
Target Start/End: Original strand, 26727972 - 26728050
Alignment:
| Q |
242 |
ttctaaatggtcacatggcccactcttctgctctccaatcaccgcaagactacttcccatcaaatttcccaatttcaat |
320 |
Q |
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|||| |||| || ||||||||||||||||||||| ||||||| || | ||| |||||||||| ||| |||||||||||| |
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| T |
26727972 |
ttctcaatgctcccatggcccactcttctgctcttcaatcactgccaaactccttcccatcatattccccaatttcaat |
26728050 |
T |
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