View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8233_low_14 (Length: 366)

Name: NF8233_low_14
Description: NF8233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8233_low_14
NF8233_low_14
[»] chr4 (24 HSPs)
chr4 (1-345)||(7765178-7765522)
chr4 (1-345)||(7786000-7786344)
chr4 (30-343)||(7770990-7771303)
chr4 (30-343)||(7789675-7789988)
chr4 (30-342)||(7237900-7238212)
chr4 (68-249)||(7877344-7877525)
chr4 (97-249)||(7774102-7774254)
chr4 (55-344)||(7822580-7822869)
chr4 (55-344)||(7800248-7800537)
chr4 (69-244)||(7904657-7904832)
chr4 (30-151)||(45372428-45372549)
chr4 (55-344)||(7813091-7813380)
chr4 (61-151)||(48156798-48156888)
chr4 (55-159)||(48891020-48891124)
chr4 (52-151)||(49044600-49044699)
chr4 (58-345)||(7907939-7908232)
chr4 (60-159)||(48862857-48862959)
chr4 (60-158)||(45366582-45366683)
chr4 (52-151)||(33134194-33134296)
chr4 (46-151)||(48170957-48171065)
chr4 (46-151)||(48870144-48870249)
chr4 (46-151)||(48885830-48885935)
chr4 (86-151)||(49041509-49041574)
chr4 (68-125)||(49048996-49049053)
[»] chr5 (4 HSPs)
chr5 (28-334)||(1812009-1812309)
chr5 (179-334)||(1811766-1811921)
chr5 (62-159)||(29712832-29712929)
chr5 (86-159)||(29695794-29695867)
[»] chr3 (4 HSPs)
chr3 (25-259)||(11024800-11025034)
chr3 (55-259)||(11015788-11015992)
chr3 (30-259)||(11006225-11006454)
chr3 (58-151)||(47452278-47452371)
[»] chr8 (5 HSPs)
chr8 (42-149)||(12194899-12195006)
chr8 (42-149)||(12439327-12439434)
chr8 (42-145)||(12199905-12200008)
chr8 (42-145)||(12444333-12444436)
chr8 (59-193)||(15348477-15348611)
[»] chr1 (1 HSPs)
chr1 (97-159)||(24309830-24309892)
[»] scaffold0508 (1 HSPs)
scaffold0508 (97-159)||(11915-11977)
[»] chr6 (2 HSPs)
chr6 (30-151)||(21015362-21015483)
chr6 (68-128)||(14193139-14193199)
[»] chr2 (1 HSPs)
chr2 (99-158)||(21426041-21426100)


Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 7765178 - 7765522
Alignment:
Q  1 agaataacgctgctcaaagcatggattttcctcaagaactgatcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttg 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7765178 agaataacgctgctcaaagcatggatcttcctcaagaactgatcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttg 7765277  T
Q  101 taagttatggttttctattatctctgatcctcaatttgcaaattcacatttccaacttaaccatgcaacgcacactcgtagatttttatgcatttcagct 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  7765278 taagttatggttttctattatctctgatcctcactttgcaaattcacatttccaacttaaccatgcaaaacacactcgtagatttttatgcatttcagct 7765377  T
Q  201 ctatctcctgaaattcgatccatagattttgatgcatttcttaacgatgctcctgcttcacccaactttaactgttcccttccagactcttattttccct 300  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7765378 ctatctcctgaaattcgatcaattgattttgatgcatttcttaacgatgctcctgcttcacccaactttaactgttcccttccagactcttattttccct 7765477  T
Q  301 ttgaaatcaaagggtcatgtagaggttttatatttatgtaccgtc 345  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  7765478 ttgaaattaaagggtcatgtagaggttttatatttatgtaccgtc 7765522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 7786000 - 7786344
Alignment:
Q  1 agaataacgctgctcaaagcatggattttcctcaagaactgatcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttg 100  Q
    ||||||||| |||||||||||||||| ||||||||||||||||| |||||  |||||||||||| |||||||| |||||  || | ||||| ||| ||||    
T  7786000 agaataacgttgctcaaagcatggatcttcctcaagaactgatccttcaaactctgttgaggttgccggtgaaatctcttatattgttcaaatgcgtttg 7786099  T
Q  101 taagttatggttttctattatctctgatcctcaatttgcaaattcacatttccaacttaaccatgcaacgcacactcgtagatttttatgcatttcagct 200  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||  ||||||||||||||||||||||||||||||    
T  7786100 taagctatggatttctattatctctgatcctcaatttgcaaattcacatttccaacttaaccttacaaaacacactcgtagatttttatgcatttcagct 7786199  T
Q  201 ctatctcctgaaattcgatccatagattttgatgcatttcttaacgatgctcctgcttcacccaactttaactgttcccttccagactcttattttccct 300  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7786200 ctatctcctgaaattcgatcaattgattttgatgcatttcttaacgatgctcctgcttcacccaactttaactgttcccttccagactcttattttccct 7786299  T
Q  301 ttgaaatcaaagggtcatgtagaggttttatatttatgtaccgtc 345  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||    
T  7786300 ttgaaattaaagggtcatgtagaggttttatatttatgtatcgtc 7786344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 30 - 343
Target Start/End: Original strand, 7770990 - 7771303
Alignment:
Q  30 cctcaagaactgatcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatc 129  Q
    ||||| ||||| || || ||| ||||| ||||||| ||||||||||||||  ||  |||||| ||| |||||||||  ||||||||| ||||||||||||    
T  7770990 cctcatgaactaataatccaaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatc 7771089  T
Q  130 ctcaatttgcaaattcacatttccaacttaaccatgcaacgcacactcgtagatttttatgcatttcagctctatctcctgaaattcgatccatagattt 229  Q
    |||| |||| |||||||||||| ||||||  |  |||||| |||||| |||||||||||||||| ||| ||| ||||| |||||||||||| ||||||||    
T  7771090 ctcactttgaaaattcacattttcaacttgcctctgcaacacacacttgtagatttttatgcatatcaactcaatctcatgaaattcgatctatagattt 7771189  T
Q  230 tgatgcatttcttaacgatgctcctgcttcacccaactttaactgttcccttccagactcttattttccctttgaaatcaaagggtcatgtagaggtttt 329  Q
    ||| |||||||||||||||| ||||||||||   ||| |||| | ||| |||||||| |||||||||||  ||||||| | ||| || |||||||| |||    
T  7771190 tgaagcatttcttaacgatgatcctgcttcagtgaaccttaatttttcgcttccagaatcttattttcctgttgaaattagaggttcgtgtagagggttt 7771289  T
Q  330 atatttatgtaccg 343  Q
    ||| || |||||||    
T  7771290 atacttttgtaccg 7771303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 30 - 343
Target Start/End: Original strand, 7789675 - 7789988
Alignment:
Q  30 cctcaagaactgatcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatc 129  Q
    ||||| |||||||| || ||| ||||| ||||||| ||||||||||||||  ||  |||||| ||| |||||||||  ||||||||| ||||||| ||||    
T  7789675 cctcatgaactgataatccaaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttcttttatctccgatc 7789774  T
Q  130 ctcaatttgcaaattcacatttccaacttaaccatgcaacgcacactcgtagatttttatgcatttcagctctatctcctgaaattcgatccatagattt 229  Q
    |||| |||| |||||||||||| ||||||  |   ||||| |||||| ||||||||||||| || ||| ||| ||||| ||||||| |||| ||||||||    
T  7789775 ctcactttgaaaattcacattttcaacttgcctccgcaacacacacttgtagatttttatgtatatcaactcaatctcatgaaatttgatctatagattt 7789874  T
Q  230 tgatgcatttcttaacgatgctcctgcttcacccaactttaactgttcccttccagactcttattttccctttgaaatcaaagggtcatgtagaggtttt 329  Q
    ||| |||||||||||||||| ||||||||||   ||| |||| | ||| |||||||| |||||||||||  || |||| | ||| || |||||||| |||    
T  7789875 tgaagcatttcttaacgatgatcctgcttcagtgaaccttaatttttcgcttccagaatcttattttcctgtttaaattagaggttcgtgtagagggttt 7789974  T
Q  330 atatttatgtaccg 343  Q
    ||| || |||||||    
T  7789975 atacttttgtaccg 7789988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 30 - 342
Target Start/End: Complemental strand, 7238212 - 7237900
Alignment:
Q  30 cctcaagaactgatcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatc 129  Q
    ||||| ||||| ||||| ||| ||||| ||||||| || |||||||||||  |   |||||| ||  |||||||||  ||||||||| |||||||||| |    
T  7238212 cctcatgaactaatcatccaaattctgatgaggttgccagtgaagtctcttatctgtttcaaatgtgtttgtaagtcttggttttctcttatctctgacc 7238113  T
Q  130 ctcaatttgcaaattcacatttccaacttaaccatgcaacgcacactcgtagatttttatgcatttcagctctatctcctgaaattcgatccatagattt 229  Q
    |||| |||||||||||||||||||||| || |  ||||||||| |||||||| ||||||||||| ||| || |||||| |||||||||||| || |||      
T  7238112 ctcactttgcaaattcacatttccaacatacctctgcaacgcatactcgtaggtttttatgcatatcacctttatctcatgaaattcgatcaatcgatcc 7238013  T
Q  230 tgatgcatttcttaacgatgctcctgcttcacccaactttaactgttcccttccagactcttattttccctttgaaatcaaagggtcatgtagaggtttt 329  Q
    ||| |||||||||||||||| ||||| |||||  |||  ||| | ||   || | || |||||||||||  ||||||||| ||| ||||||||||| |||    
T  7238012 tgaagcatttcttaacgatgatcctggttcacagaaccgtaattttttgttttcggaatcttattttcctgttgaaatcagaggttcatgtagagggttt 7237913  T
Q  330 atatttatgtacc 342  Q
    ||| || ||||||    
T  7237912 atacttttgtacc 7237900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 68 - 249
Target Start/End: Original strand, 7877344 - 7877525
Alignment:
Q  68 ggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacatttccaacttaaccatgca 167  Q
    ||||||||||||  ||  |||||| |||||||||||| ||||||||||| |||||||||||||  | ||||||||||||||||| ||||| | |    ||    
T  7877344 ggtgaagtctcttatacgtttcaaatgcatttgtaagctatggttttctcttatctctgatcccaattttgcaaattcacattttcaactcaccaccaca 7877443  T
Q  168 acgcacactcgtagatttttatgcatttcagctctatctcctgaaattcgatccatagattttgatgcatttcttaacgatg 249  Q
    |||||||||| |||| || | ||||| ||| ||||||||| |||||||||||| |||| |||||| ||||||||||||||||    
T  7877444 acgcacactcctagaattatgtgcatatcacctctatctcatgaaattcgatcaataggttttgaagcatttcttaacgatg 7877525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 97 - 249
Target Start/End: Complemental strand, 7774254 - 7774102
Alignment:
Q  97 tttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacatttccaacttaaccatgcaacgcacactcgtagatttttatgcatttc 196  Q
    |||||||| ||||||||||| ||||||||||||| || ||||||||||||||||| ||||| | |    |||||||||||| |||| || | ||||| ||    
T  7774254 tttgtaagctatggttttctcttatctctgatccccattttgcaaattcacattttcaactcaccaccacaacgcacactcctagaattatgtgcatatc 7774155  T
Q  197 agctctatctcctgaaattcgatccatagattttgatgcatttcttaacgatg 249  Q
    | ||||||||| |||||||||||| |||| |||||| ||||||||||||||||    
T  7774154 atctctatctcatgaaattcgatctataggttttgaagcatttcttaacgatg 7774102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 55 - 344
Target Start/End: Original strand, 7822580 - 7822869
Alignment:
Q  55 tgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacatttcca 154  Q
    |||||||||| |||||||||| |||  ||  |||||||||  ||||||| | |||||||||| ||||||||||||| || |||||||||||||| || ||    
T  7822580 tgttgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctctgatccccactttgcaaattcacaatttca 7822679  T
Q  155 acttaacca-tgcaacgcacactcgtagatttttatgcatttcagctctatctcctgaaattcgatccatagattttgatgcatttcttaacgatgctcc 253  Q
    | || |||| |||||| || ||||||||| || || || | ||| || |||||| |||||||||||| |||||| |||||||||  ||||| |||| ||     
T  7822680 a-ttcaccactgcaacacatactcgtagaattataggcttatcatctttatctcatgaaattcgatctatagatgttgatgcatggcttaatgatgatct 7822778  T
Q  254 tgcttcacccaactttaactgttcccttccagactcttattttccctttgaaatcaaagggtcatgtagaggttttatatttatgtaccgt 344  Q
    | ||||||| ||| |||| |  |  |||||  | ||||||||||| |||||||| | |||||||||| |||| ||| ||||| | ||||||    
T  7822779 tccttcaccgaaccttaatttcttgcttcctaaatcttattttccttttgaaattatagggtcatgtggagggtttttatttttataccgt 7822869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 55 - 344
Target Start/End: Original strand, 7800248 - 7800537
Alignment:
Q  55 tgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacatttcca 154  Q
    |||||||||| |||||||||| |||  ||  |||||||||  ||||||| | |||||||||| || |||||||||| |  |||||||||||||| || ||    
T  7800248 tgttgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttgtctctgatccccgctttgcaaattcacaatttca 7800347  T
Q  155 acttaacca-tgcaacgcacactcgtagatttttatgcatttcagctctatctcctgaaattcgatccatagattttgatgcatttcttaacgatgctcc 253  Q
    | || |||| |||||| || ||||||||| || || || | ||| || |||||| |||||||||||| |||||| |||||||||  ||||| |||| ||     
T  7800348 a-ttcaccactgcaacacatactcgtagaattataggcttatcatctttatctcatgaaattcgatctatagatgttgatgcatggcttaatgatgatct 7800446  T
Q  254 tgcttcacccaactttaactgttcccttccagactcttattttccctttgaaatcaaagggtcatgtagaggttttatatttatgtaccgt 344  Q
    | ||||||| ||| |||| |  |  |||||  | ||||||||||| |||||||| | |||||||||| |||| ||| ||||| | ||||||    
T  7800447 tccttcaccgaaccttaatttcttgcttcctaaatcttattttccttttgaaattatagggtcatgtggagggtttttatttttataccgt 7800537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 69 - 244
Target Start/End: Original strand, 7904657 - 7904832
Alignment:
Q  69 gtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacatttccaacttaaccatgcaa 168  Q
    |||||||||||  ||  |||||| ||  |||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||| | |   |||     
T  7904657 gtgaagtctcttatacgtttcaaatgtgtttgtaagttatggttttctcttatctctgatcctcactttgcaaattcacattttcaactcaccgccgcag 7904756  T
Q  169 cgcacactcgtagatttttatgcatttcagctctatctcctgaaattcgatccatagattttgatgcatttcttaa 244  Q
    |  |||||| |||| || | ||||| |||  |||||||| |||||||| |||  || ||||||| |||||||||||    
T  7904757 ctaacactcctagaattatgtgcatatcatatctatctcatgaaattcaatctttatattttgaagcatttcttaa 7904832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 45372549 - 45372428
Alignment:
Q  30 cctcaagaactgatcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatc 129  Q
    ||||| ||| |||| |||||| ||||  | ||||| ||||||||||||||  ||  |||||| ||  |||||||||  ||||||||||||||||||||||    
T  45372549 cctcatgaattgatgattcaaattctactaaggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggttttctattatctctgatc 45372450  T
Q  130 ctcaatttgcaaattcacattt 151  Q
    |||| |||||||||||||||||    
T  45372449 ctcattttgcaaattcacattt 45372428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 55 - 344
Target Start/End: Original strand, 7813091 - 7813380
Alignment:
Q  55 tgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacatttcca 154  Q
    |||||||||| |||||||||| |||  ||  |||||||||  ||||||| | |||||||||| |||||||||| || || |||||||| ||||| || ||    
T  7813091 tgttgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctctgaaccccactttgcaaagtcacaatttca 7813190  T
Q  155 acttaacca-tgcaacgcacactcgtagatttttatgcatttcagctctatctcctgaaattcgatccatagattttgatgcatttcttaacgatgctcc 253  Q
    | || |||| |||||| || ||||||||  || || || | ||| || |||||| |||||||||||| |||||| |||||||||  ||||| |||| ||     
T  7813191 a-ttcaccactgcaacacatactcgtaggattataggcttatcatctttatctcatgaaattcgatcgatagatgttgatgcatggcttaatgatgatct 7813289  T
Q  254 tgcttcacccaactttaactgttcccttccagactcttattttccctttgaaatcaaagggtcatgtagaggttttatatttatgtaccgt 344  Q
    | ||||| | ||| |||| |  |  |||||  | || |||||||| |||||||| | |||||||||| |||| ||| ||||| | ||||||    
T  7813290 tccttcagcgaaccttaatttcttgcttcctaaatcgtattttccttttgaaattatagggtcatgtggagggtttttatttttataccgt 7813380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 151
Target Start/End: Complemental strand, 48156888 - 48156798
Alignment:
Q  61 ggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacattt 151  Q
    |||||||||||||||||||  ||  |||||||||| |||||||||  ||||||||| ||||||| ||| |||| ||||||||||| |||||    
T  48156888 ggttaccggtgaagtctcttctacgtttcaagtgcgtttgtaagtcttggttttctcttatctccgatactcattttgcaaattctcattt 48156798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 159
Target Start/End: Original strand, 48891020 - 48891124
Alignment:
Q  55 tgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacatttcca 154  Q
    ||||||||||| |||| ||||||||  ||  |||||| ||| |||||||||  ||||||||| || |||| |||||||| ||||||||||| ||||| ||    
T  48891020 tgttgaggttatcggtaaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttgtctcagatcctcattttgcaaattcgcattttca 48891119  T
Q  155 actta 159  Q
    |||||    
T  48891120 actta 48891124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 151
Target Start/End: Complemental strand, 49044699 - 49044600
Alignment:
Q  52 ttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacattt 151  Q
    ||||| ||||||| || |||| |||||| |||  |||||||||  |||||||||||||||||||| |||||||| |  | || |||||||||||||||||    
T  49044699 ttctgctgaggttgccagtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctctcaaacccactttgcaaattcacattt 49044600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 345
Target Start/End: Original strand, 7907939 - 7908232
Alignment:
Q  58 tgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacatttccaact 157  Q
    ||||||| ||||||||||||||   |  ||||||||   || |||||| |||||||||| ||||||||| ||| || ||||||||||||||||| |||||    
T  7907939 tgaggttgccggtgaagtctcttacacgtttcaagtctgttcgtaagtcatggttttctcttatctctgctccccattttgcaaattcacattttcaact 7908038  T
Q  158 taaccatgcaacgcac---actcgtagatttttatgcatttcagctctatctcctgaaattcgatccatagattttgatgcatttcttaac---gatgct 251  Q
    || |  |||||  |||    ||  |||| || | |  || ||| ||||||||| ||||| |||||| ||||||||| | ||||||||||||   |||| |    
T  7908039 tacctctgcaaaacacgctgcttctagaattatgtttatatcaactctatctcatgaaactcgatctatagattttaaagcatttcttaacgatgatgat 7908138  T
Q  252 cctgcttcacccaactttaactgttccctt-ccagactcttattttccctttgaaatcaaagggtcatgtagaggttttatatttatgtaccgtc 345  Q
    |||||||||| |||| |||  | ||| ||| || || ||| |||||||  ||||||| | ||| ||||||||||| |||||| || |||||||||    
T  7908139 cctgcttcactcaacattactttttcgcttacccga-tctcattttccggttgaaattagaggttcatgtagagggtttatacttttgtaccgtc 7908232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 60 - 159
Target Start/End: Original strand, 48862857 - 48862959
Alignment:
Q  60 aggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctct---gatcctcaatttgcaaattcacatttccaac 156  Q
    ||||||||||||||||||||  |   |||||| ||| |||| ||||  ||||||||| ||||||||   |||||||| ||||||||||||||||| ||||    
T  48862857 aggttaccggtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttatctctcatgatcctcactttgcaaattcacattttcaac 48862956  T
Q  157 tta 159  Q
    |||    
T  48862957 tta 48862959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 158
Target Start/End: Complemental strand, 45366683 - 45366582
Alignment:
Q  60 aggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctc---tgatcctcaatttgcaaattcacatttccaac 156  Q
    |||||||| |||||||||||  ||  |||||||||| |||||||||  ||||||||| |||||||   |||| | || ||||||||||||||||| ||||    
T  45366683 aggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagtattggttttctcttatctctcgtgattcacactttgcaaattcacattttcaac 45366584  T
Q  157 tt 158  Q
    ||    
T  45366583 tt 45366582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 151
Target Start/End: Complemental strand, 33134296 - 33134194
Alignment:
Q  52 ttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctc---tgatcctcaatttgcaaattcaca 148  Q
    |||||||||| |||||||||||||||||  |   |||||| ||| ||||||||   || |||||| |||||||   ||||||||| ||||||||||||||    
T  33134296 ttctgttgagattaccggtgaagtctcttattcgtttcaaatgcgtttgtaagccttgattttctcttatctctaatgatcctcactttgcaaattcaca 33134197  T
Q  149 ttt 151  Q
    |||    
T  33134196 ttt 33134194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 151
Target Start/End: Complemental strand, 48171065 - 48170957
Alignment:
Q  46 ttcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctc---tgatcctcaatttgcaaa 142  Q
    ||||| ||||| |||||||| |||||||||||||  ||  |||||| ||  |||||||||  |||||| || |||||||   ||||||||| ||||||||    
T  48171065 ttcaaattctgctgaggttatcggtgaagtctcttctacgtttcaaatgtgtttgtaagtcttggtttgctcttatctctcatgatcctcactttgcaaa 48170966  T
Q  143 ttcacattt 151  Q
    ||| |||||    
T  48170965 ttcgcattt 48170957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 151
Target Start/End: Original strand, 48870144 - 48870249
Alignment:
Q  46 ttcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattc 145  Q
    ||||| ||||| ||||| |||||||||| |||||  |   |||||| ||| |||||||||  ||||||| | ||||||| ||||| |  |||||||||||    
T  48870144 ttcaaattctgctgaggctaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatctccgatcccctttttgcaaattc 48870243  T
Q  146 acattt 151  Q
    ||||||    
T  48870244 acattt 48870249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 151
Target Start/End: Original strand, 48885830 - 48885935
Alignment:
Q  46 ttcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattc 145  Q
    ||||| ||||| ||||| |||||||||| |||||  |   |||||| ||| |||||||||  ||||||| | ||||||| ||||| |  |||||||||||    
T  48885830 ttcaaattctgctgaggctaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatctccgatcccctttttgcaaattc 48885929  T
Q  146 acattt 151  Q
    ||||||    
T  48885930 acattt 48885935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 49041574 - 49041509
Alignment:
Q  86 tttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacattt 151  Q
    |||||| ||| |||| ||||  ||||||||| ||||||||||||| || ||||||||||| |||||    
T  49041574 tttcaaatgcgtttgcaagtcttggttttctcttatctctgatccccattttgcaaattctcattt 49041509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 49049053 - 49048996
Alignment:
Q  68 ggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctct 125  Q
    ||||| |||||| |||  |||||||||  |||||||||||||||||||| ||||||||    
T  49049053 ggtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctct 49048996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 6e-59; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 28 - 334
Target Start/End: Original strand, 1812009 - 1812309
Alignment:
Q  28 ttcctcaagaactgatcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctga 127  Q
    ||||||| ||||||||| ||||| || ||||||||||||| ||||||| |||| ||  || ||| ||  |||||||||||||||||||| |||||||  |    
T  1812009 ttcctcaggaactgatcgttcaaattttgttgaggttaccagtgaagtatctcatacgttccaaatgggtttgtaagttatggttttctcttatctcaaa 1812108  T
Q  128 tcctcaatttgcaaattcacatttccaacttaaccatgcaacgcacactcgtagatttttatgcatttcagctctatctcctgaaattcgatccatagat 227  Q
    ||| || ||||||||||  ||||| |||||||      |||| ||||||| ||||||||||||||||||||||  ||||||| |||||||| | || |||    
T  1812109 tccccactttgcaaattatcattttcaactta------caacacacactcttagatttttatgcatttcagcttaatctcctcaaattcgacctatcgat 1812202  T
Q  228 tttgatgcatttcttaacgatgctcctgcttcacccaactttaactgttcccttccagactcttattttccctttgaaatcaaagggtcatgtagaggtt 327  Q
    |||||||||||||||||||||| |||||||||||  |||||||| ||||  |||||  | ||||||||| |||||||||| |||||||||||||||  ||    
T  1812203 tttgatgcatttcttaacgatgttcctgcttcactgaactttaattgtttgcttcctcagtcttatttttcctttgaaattaaagggtcatgtagatatt 1812302  T
Q  328 ttatatt 334  Q
    |||||||    
T  1812303 ttatatt 1812309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 179 - 334
Target Start/End: Complemental strand, 1811921 - 1811766
Alignment:
Q  179 tagatttttatgcatttcagctctatctcctgaaattcgatccatagattttgatgcatttcttaacgatgctcctgcttcacccaactttaactgttcc 278  Q
    ||||||||||| ||||||| || ||||||||||||||||||| || ||||||||||||||||||||||||| |||||||| ||  |||||||| ||||      
T  1811921 tagatttttatacatttcaactttatctcctgaaattcgatctatcgattttgatgcatttcttaacgatgttcctgctttacggaactttaattgtttg 1811822  T
Q  279 cttccagactcttattttccctttgaaatcaaagggtcatgtagaggttttatatt 334  Q
    || ||  | |||||||||||||||||||| |||||||||||| |||||||||||||    
T  1811821 ctccctcagtcttattttccctttgaaattaaagggtcatgttgaggttttatatt 1811766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 62 - 159
Target Start/End: Complemental strand, 29712929 - 29712832
Alignment:
Q  62 gttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacatttccaactta 159  Q
    ||||||||||||||||||  |   |||||||||| |||||||||||||||||||| |||||||| |  || | || |||||||||||||| |||||||    
T  29712929 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaactta 29712832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 159
Target Start/End: Original strand, 29695794 - 29695867
Alignment:
Q  86 tttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacatttccaactta 159  Q
    |||||| ||| |||||||||||||||| ||| |||| ||| | ||||| ||||||||||||||||| |||||||    
T  29695794 tttcaaatgcgtttgtaagttatggttatctcttatatctcaacctcactttgcaaattcacattttcaactta 29695867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 25 - 259
Target Start/End: Complemental strand, 11025034 - 11024800
Alignment:
Q  25 attttcctcaagaactgatcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctc 124  Q
    |||| ||||| ||| ||||||| ||| |  |||||||||||||||||||||||||| ||  |||||| ||| ||||||||| ||||||  || |||||||    
T  11025034 atttgcctcatgaattgatcatacaaatcatgttgaggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcatggttagctcttatctc 11024935  T
Q  125 tgatcctcaatttgcaaattcacatttccaacttaaccatgcaacgcacactcgtagatttttatgcatttcagctctatctcctgaaattcgatccata 224  Q
    ||||| | | |||||||| || |||||  |||||  || |||||| ||||||  |||| || | | ||| ||| ||||| |||  |||| ||||||||||    
T  11024934 tgatcataactttgcaaaatcgcattttgaactttcccctgcaacacacactaatagaattgtgttcatgtcaactctagctctggaaactcgatccata 11024835  T
Q  225 gattttgatgcatttcttaacgatgctcctgcttc 259  Q
    |||||||| ||||  |||||||||| | |||||||    
T  11024834 gattttgaagcatcgcttaacgatgattctgcttc 11024800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 259
Target Start/End: Complemental strand, 11015992 - 11015788
Alignment:
Q  55 tgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacatttcca 154  Q
    |||||||||||||||||||||||||| ||  |||||| ||| ||||||||| || |||  || |||||||||||| | | |||||||| || |||||  |    
T  11015992 tgttgaggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcattgttagctcttatctctgatcataactttgcaaaatcgcattttga 11015893  T
Q  155 acttaaccatgcaacgcacactcgtagatttttatgcatttcagctctatctcctgaaattcgatccatagattttgatgcatttcttaacgatgctcct 254  Q
    ||||  |  |||||| ||||||  |||| || | | ||| ||| ||||| ||| ||||| ||||||||| |||||||| || |  |||||||||| | ||    
T  11015892 actttccactgcaacacacactaatagaattgtgttcatgtcaactctagctcttgaaactcgatccattgattttgaagcgtcgcttaacgatgattct 11015793  T
Q  255 gcttc 259  Q
    |||||    
T  11015792 gcttc 11015788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 30 - 259
Target Start/End: Complemental strand, 11006454 - 11006225
Alignment:
Q  30 cctcaagaactgatcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatc 129  Q
    ||||| ||| ||||||| ||| |  |||||||||| ||||||||||| ||  ||  |||||||||  ||||||||| ||||||  || ||||||||||||    
T  11006454 cctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctgatc 11006355  T
Q  130 ctcaatttgcaaattcacatttccaacttaaccatgcaacgcacactcgtagatttttatgcatttcagctctatctcctgaaattcgatccatagattt 229  Q
    |||| |||||||| || |||||  | |||  |  |  ||| ||||||  |||| || | | ||| ||| ||| | ||| |||||||||||||||||||||    
T  11006354 ctcactttgcaaaatcgcattttgacctttccactagaacacacactaatagaattgtgttcatgtcaactccagctcttgaaattcgatccatagattt 11006255  T
Q  230 tgatgcatttcttaacgatgctcctgcttc 259  Q
    ||| ||||  |||||||||| | |||||||    
T  11006254 tgaagcatcgcttaacgatgattctgcttc 11006225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 58 - 151
Target Start/End: Complemental strand, 47452371 - 47452278
Alignment:
Q  58 tgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacattt 151  Q
    ||||||| ||||||||||||||  ||   ||||||||||||| ||||| |||||||||| |||||||||||||||  ||||||||  |||||||    
T  47452371 tgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctctttgcaaaaacacattt 47452278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 42 - 149
Target Start/End: Original strand, 12194899 - 12195006
Alignment:
Q  42 atcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaa 141  Q
    ||||||||| | ||| ||||||| |||||||||||||| |||  |||||| ||||||||||||| |||||| ||| ||||||||||||| || |||||||    
T  12194899 atcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaa 12194998  T
Q  142 attcacat 149  Q
    ||||||||    
T  12194999 attcacat 12195006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 42 - 149
Target Start/End: Original strand, 12439327 - 12439434
Alignment:
Q  42 atcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaa 141  Q
    ||||||||| | ||| ||||||| |||||||||||||| |||  |||||| ||||||||||||| |||||| ||| ||||||||||||| || |||||||    
T  12439327 atcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaa 12439426  T
Q  142 attcacat 149  Q
    ||||||||    
T  12439427 attcacat 12439434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 12199905 - 12200008
Alignment:
Q  42 atcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaa 141  Q
    ||||||||| | ||| ||||||| |||||||||||||| |||  |||||| ||  ||||||||| |||||||||| |||||||||||||||| |||||||    
T  12199905 atcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaa 12200004  T
Q  142 attc 145  Q
    ||||    
T  12200005 attc 12200008  T

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Target: chr8; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 12444333 - 12444436
Alignment:
Q  42 atcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaa 141  Q
    ||||||||| | ||| ||||||| |||||||||||||| |||  |||||| ||  ||||||||| |||||||||| |||||||||||||||| |||||||    
T  12444333 atcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctcactttgcaa 12444432  T
Q  142 attc 145  Q
    ||||    
T  12444433 attc 12444436  T

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Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 59 - 193
Target Start/End: Original strand, 15348477 - 15348611
Alignment:
Q  59 gaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacatttccaactt 158  Q
    |||||||||||||||||||||  ||  |||||| ||| |||||||||  ||||||||| |||||||||||||| | || |||||||||||||| ||| ||    
T  15348477 gaggttaccggtgaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaatt 15348576  T
Q  159 aaccatgcaacgcacactcgtagatttttatgcat 193  Q
    | |   ||||| |||||||||||| |||| |||||    
T  15348577 accgccgcaacacacactcgtagaattttgtgcat 15348611  T

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Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 24309830 - 24309892
Alignment:
Q  97 tttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacatttccaactta 159  Q
    |||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| |||||||    
T  24309830 tttgtaagttatggttttctcttatctctgattctcactttgcaaattcacattttcaactta 24309892  T

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Target: scaffold0508 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 11915 - 11977
Alignment:
Q  97 tttgtaagttatggttttctattatctctgatcctcaatttgcaaattcacatttccaactta 159  Q
    ||||||||| |||||||||| |||||||||||  ||| ||||||||||||||||| |||||||    
T  11915 tttgtaagtcatggttttctcttatctctgataatcactttgcaaattcacattttcaactta 11977  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 151
Target Start/End: Original strand, 21015362 - 21015483
Alignment:
Q  30 cctcaagaactgatcattcaatttctgttgaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatc 129  Q
    ||||||||| ||||||| | | || |||||||||||||||| | ||||||  ||  |||||||||  |||||||||||| ||||||| |||||||| |      
T  21015362 cctcaagaattgatcatcctaattttgttgaggttaccggtcatgtctcttctacgtttcaagtgtgtttgtaagttattgttttctcttatctctcaaa 21015461  T
Q  130 ctcaatttgcaaattcacattt 151  Q
    | || ||||||| |||||||||    
T  21015462 cccactttgcaatttcacattt 21015483  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 14193199 - 14193139
Alignment:
Q  68 ggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgat 128  Q
    ||||||||||||||||| |||||| ||  |||||||||| ||| ||||| |||||| ||||    
T  14193199 ggtgaagtctctcttaggtttcaaatgtgtttgtaagttttggctttctcttatctttgat 14193139  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 158
Target Start/End: Original strand, 21426041 - 21426100
Alignment:
Q  99 tgtaagttatggttttctattatctctgatcctcaatttgcaaattcacatttccaactt 158  Q
    |||||||||||| ||||||| |||||| ||||||| ||| ||| ||||||||| ||||||    
T  21426041 tgtaagttatggctttctatcatctctcatcctcatttttcaacttcacattttcaactt 21426100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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