View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8233_low_17 (Length: 332)
Name: NF8233_low_17
Description: NF8233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8233_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 33 - 314
Target Start/End: Original strand, 42687604 - 42687885
Alignment:
| Q |
33 |
atgactaagttgtcattttcaaatttgtttccctaataacatatgtgtcttgcttttgtcttatttcgaacagatccaaattctgagaaaccagctacag |
132 |
Q |
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| T |
42687604 |
atgactaagttgtcattttcaaatttgttttcctaataacatatgtgtcttgcttttgtcttatttcgaacagatccaaattctgagaaaccagctacag |
42687703 |
T |
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| Q |
133 |
aaatatatgttccaagagatgaaaattttggtcacttgaagtcctcagactttctcacatatggaataaaatctgtatctcaaaacgtattacccgcatt |
232 |
Q |
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| T |
42687704 |
aaatatatgttccaagagatgaaaattttggtcacttgaagtcctcagactttctcacatatggaataaaatctgtatctcaaaacgtattacccgcatt |
42687803 |
T |
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| Q |
233 |
cgaatctgcatttgatttgaattttacaccacgcgagtttgatagtttccaagatgtgcgtgacctctttgaaggtggaatt |
314 |
Q |
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| T |
42687804 |
cgaatctgcatttgatttgaattttacaccgcgcgagtttgatagtttccaagatgtgcgtgacctctttgaaggtggaatt |
42687885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 42694120 - 42694045
Alignment:
| Q |
142 |
ttccaagagatgaaaattttggtcacttgaagtcctcagactttctcacatatggaataaaatctgtatctcaaaa |
217 |
Q |
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| T |
42694120 |
ttccaagagatgaagcttttggtcacttgaaatcatcagattttcttacttatggactgaaagcagtatctcaaaa |
42694045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 314
Target Start/End: Original strand, 9603394 - 9603573
Alignment:
| Q |
138 |
tatgttccaagagatgaaaattttggtcacttgaagtcctcagactttctcacatatggaataaaatctgtatctcaaaacgtattacccgcattcgaat |
237 |
Q |
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| T |
9603394 |
tatgttccaagagatgaaaattttggacacttgaagtcatctgacttccttacatatggaataaaatcattgtctcaagatgtgttacctttgtttaaat |
9603493 |
T |
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| Q |
238 |
ctgca---tttgatttgaattttacaccacgcgagtttgatagtttccaagatgtgcgtgacctctttgaaggtggaatt |
314 |
Q |
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| T |
9603494 |
ctgtaatctttgatttgaatttcactccaaatgagtttgatagcttcgatgaagtgcgtgacttatttgaaggtggaatt |
9603573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 205
Target Start/End: Original strand, 9589103 - 9589162
Alignment:
| Q |
146 |
aagagatgaaaattttggtcacttgaagtcctcagactttctcacatatggaataaaatc |
205 |
Q |
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| T |
9589103 |
aagagatgaaaattttggtcacttaaagtcatcagacttccttacatacggattaaaatc |
9589162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 6451942 - 6451878
Alignment:
| Q |
138 |
tatgttccaagagatgaaaattttggtcacttgaagtcctcagactttctcacatatggaataaa |
202 |
Q |
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| T |
6451942 |
tatgttccaagagatgaaaattttggtcacttgaagtcatcagactttcttatgtatggaataaa |
6451878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 6458032 - 6457965
Alignment:
| Q |
138 |
tatgttccaagagatgaaaattttggtcacttgaagtcctcagactttctcacatatggaataaaatc |
205 |
Q |
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| T |
6458032 |
tatgttccaagagatgaaaattttggtcacttgaagtcatcagacttccttatgtatggaataaaatc |
6457965 |
T |
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