View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8233_low_2 (Length: 614)
Name: NF8233_low_2
Description: NF8233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8233_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 494; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 88 - 605
Target Start/End: Complemental strand, 39732809 - 39732292
Alignment:
| Q |
88 |
gtcaactgaaatagaaagataaacatcatgaatagattcgggggataccatttatagcccccaacatcaaatacatctgaacagagctttatctcatttc |
187 |
Q |
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| T |
39732809 |
gtcaactgaaatagaaagataaacatcatgaatagattcgggggataccatttatagcccccaacatcaaatacatctgaacagagctttatctcgttcc |
39732710 |
T |
|
| Q |
188 |
tccaagaaaatctttcaattctccatgtgaatttaaatggagaaggatccttgccaggctggctatccacaatggtggcattttcaggttgaggacctac |
287 |
Q |
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| T |
39732709 |
tccaagaaaatctttcaattctccatgtgaatttaaatggagaaggatccttgccaggctggctatccacaatggtggcattttcaggttgaggacctac |
39732610 |
T |
|
| Q |
288 |
taatgttgataaacataaatgaaaagagcaattaagtaagtatcaagacttgaattatctgaaaacttggagaggtaaaacaaataagagtagtcccgca |
387 |
Q |
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| T |
39732609 |
taatgttcataaaaataaatgaaaagagcaattaagtaagtatcaagacttgaattatctgaaaacttggagaggtaaaacaaataagagtagtcccgca |
39732510 |
T |
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| Q |
388 |
gatgcttagtccagcaatgtagaatggctaaagaagtacatgaacatgattggtgtatatgtcttgagtttgtgaatatgattttgaagttcatgaacca |
487 |
Q |
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| T |
39732509 |
gatgtttagtccagcaatgtagaatggctaaagaagtacatgaacatgattggtgtatatgtcatgagtttgtgaatatgattttgaagttcatgaacca |
39732410 |
T |
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| Q |
488 |
tataccaaaataagcccacataaccgtatcgtaaatcattcatccgtgtttaccagattgacttatggacctttaagttacatattacctatgaagcatg |
587 |
Q |
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| T |
39732409 |
tataccaaaataagcccacataaccgtatcgtaaatcattcatccgtgtttaccagattgacttatggacctttaagttacatattacctatgaagcatg |
39732310 |
T |
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| Q |
588 |
gactccgacacgaacacc |
605 |
Q |
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| T |
39732309 |
gactccgacacgaacacc |
39732292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 39732913 - 39732840
Alignment:
| Q |
19 |
aaatacacacaggaactaatgtaacaactacaacaaaatcacttcctccaatagatagaatctacatgggtcaa |
92 |
Q |
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| T |
39732913 |
aaatacacacaggaactaatgtaacaactacaacaaaatcagttcctccaatagatagaatctacatggctcaa |
39732840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 132 - 323
Target Start/End: Original strand, 37476844 - 37477029
Alignment:
| Q |
132 |
ataccatttatagcccccaacatcaaatacatctgaacagagctttatctcatttctccaagaaaatctttcaattctccatgtgaatttaaatggagaa |
231 |
Q |
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| T |
37476844 |
ataccatttgtaactcccaacaacaaatacatctgaatagagctttttcaaattcaccctagaaaagttgtcaattctccatgtgaatcttgatggtgaa |
37476943 |
T |
|
| Q |
232 |
ggatccttgccaggctggctatccacaatggtggcattttcaggttgaggacctactaatgttgataaacataaatgaaaagagcaattaag |
323 |
Q |
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| T |
37476944 |
ggatcctcgacaggct------ccacagtgttggcagtttcaggttgagcaaccactaatgttcatgaatataaatgaaaagagcaattaag |
37477029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 39901566 - 39901618
Alignment:
| Q |
25 |
acacaggaactaatgtaacaactacaacaaaatcacttcctccaatagataga |
77 |
Q |
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| T |
39901566 |
acacaggaactaaaataacaactacaacaaaatcacttcctacaatagataga |
39901618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 219
Target Start/End: Original strand, 39868226 - 39868313
Alignment:
| Q |
132 |
ataccatttatagcccccaacatcaaatacatctgaacagagctttatctcatttctccaagaaaatctttcaattctccatgtgaat |
219 |
Q |
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| T |
39868226 |
ataccatttgtaacccccaacttcaaatacatctgaatagagctttattgtatttatcgaagaaaatcccccaattctccatgtgaat |
39868313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 132 - 219
Target Start/End: Original strand, 39901700 - 39901787
Alignment:
| Q |
132 |
ataccatttatagcccccaacatcaaatacatctgaacagagctttatctcatttctccaagaaaatctttcaattctccatgtgaat |
219 |
Q |
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| T |
39901700 |
ataccatttatagccaccaacttcaaatacatctgaatagatctctctcgcatttttctgagaaaatctgtcaattgtccatttgaat |
39901787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 39868064 - 39868122
Alignment:
| Q |
19 |
aaatacacacaggaactaatgtaacaactacaacaaaatcacttcctccaatagataga |
77 |
Q |
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| T |
39868064 |
aaatacacataggaactaatataacagctacaacaaaatgacttccgccactagataga |
39868122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 39913661 - 39913702
Alignment:
| Q |
132 |
ataccatttatagcccccaacatcaaatacatctgaacagag |
173 |
Q |
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| T |
39913661 |
ataccatttatagcccccagcttcaaatacatctgaatagag |
39913702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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