View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8233_low_23 (Length: 249)
Name: NF8233_low_23
Description: NF8233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8233_low_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 7765187 - 7764952
Alignment:
| Q |
1 |
gcgttattcttcactctctgctttgagtaaaccctaatttt--caaacggttaagacaaaatgaaagcgaaagacacgacacgcacacaatggtaaagaa |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||| |||||||||||| |
|
|
| T |
7765187 |
gcgttattcttcactctctgctttgagtaaaccctaattttttcaaacggttaagacaaaatgatagcgaaagacacg-----cacagaatggtaaagaa |
7765093 |
T |
|
| Q |
99 |
aatatctacacgcagtggtagagagagtagtgggcttgggctcttatcgctacaaaggtttaacaaaacatttagcaaattgctatttcaacgcctttaa |
198 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7765092 |
aatatctacacgcagtggtagagagagtggtgggcttgggctcttatcgctacataggtttaacaaaacatttagcaaattgctatttcaacgcctttaa |
7764993 |
T |
|
| Q |
199 |
ttgcttacatgcaacagaaacaacattttatttgtgttcat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7764992 |
ttgcttacatgcaacagaaacaacattttatttgtgttcat |
7764952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 7785995 - 7785807
Alignment:
| Q |
19 |
tgctttgagtaaaccctaatttt-caaacggttaagacaaaatgaaagcgaaagacacgacacgcacacaatggtaaagaaaatatctacacgcagtggt |
117 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
7785995 |
tgctttgagtaaaccctaatttttcaaacggctaagacaaaatgaaagcgaaagacacgacacgcacacaatggtaaagaaaatatctacacgctatagt |
7785896 |
T |
|
| Q |
118 |
agagagagtagtgggcttgggctcttatcgctacaaaggtttaacaaaacatttagcaaattgctatttcaacgcctttaattgcttac |
206 |
Q |
| |
|
|||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| ||| | ||||||||||||| |
|
|
| T |
7785895 |
agagagagtagtgggcttgggctcatatcgttagaaaggtttaacaaaacatttagcaaattgctatttaaacacgtttaattgcttac |
7785807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University