View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8233_low_6 (Length: 530)
Name: NF8233_low_6
Description: NF8233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8233_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Complemental strand, 32229918 - 32229425
Alignment:
| Q |
1 |
aaaggaaacagaattgaataatatatatgcaacagaattaagaaaaatataaacagaggcaggatcagtaaagtaaagagcataactctattaccttaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32229918 |
aaaggaaacagaattgaataatatatatgcaacagaattaagaaaaatataaacagaggcaggatcagtaaagtaaagagcataactctgttaccttaca |
32229819 |
T |
|
| Q |
101 |
tattggatccaacttagtatatcctatcctatagattatatgataagatacacagtgctaacttatacacaatact--tagaagggatggcaatgcaagt |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| || |
|
|
| T |
32229818 |
tattggatccaacttagtatatcctatcctatagattatatgataagatacacagtgctaacttatacacaatactcttaaaagggatggcaa-----gt |
32229724 |
T |
|
| Q |
199 |
ttagtgtccttattaattaatcaaacttggtaaagtgaaatcaacgatattgttcatttaaataagcctccaacagactttgcagcaccatcaaccgcac |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32229723 |
ttagtgtccttattaattaatcaaacttggtaaagtgaaatcaacgatattgttcatttaaataagcctccaacagactttgcagcaccatcaaccgcac |
32229624 |
T |
|
| Q |
299 |
ctttggttttgccaataggatctggtttgggttttacataattagcagccgtggtagcataatctcctacagtcttatgaacaccagctgcagcatttcc |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32229623 |
ctttggttttgccaataggatctggtttgggttttacataattagcagccgtggtagcataatctcctacagtcttatgaactccagctgcagcatttcc |
32229524 |
T |
|
| Q |
399 |
cacagttttctgagcaccagcagcagcatttcctacagttttctgtgctgaagctgctgcatcctttgcacttgccagaagatcgttaggtccagccat |
497 |
Q |
| |
|
|| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32229523 |
caaagttttctgggcaccagaagcagcatttcctacagttttctgtgctgaagctgctgcatcctttgcacttgccagaagatcgttaggtccagccat |
32229425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 32225073 - 32224858
Alignment:
| Q |
1 |
aaaggaaacagaattgaataatatatatgcaacagaattaagaaaaatataaaca----gaggcaggatcagtaaagtaaagagcataactctattacct |
96 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |||||| ||||||| ||||||||||||||||||| ||||||| | |||| |||||| |
|
|
| T |
32225073 |
aaaggaaacagaattgaataataaatatgcaacagaattaggaaaaacataaacaatcagaggcaggatcagtaaagtgaagagcagagctctgttacct |
32224974 |
T |
|
| Q |
97 |
tacatattggatccaacttagtatatcctatcctatagattatatgataagatacacagtgctaacttatacacaatacttagaagggatggcaatgcaa |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||| |
|
|
| T |
32224973 |
tacatattggatccaacttagtatatcctatcctatagtttatatgataagatacacagtgctaacttatacac-atactt-gaagggatg-----acaa |
32224881 |
T |
|
| Q |
197 |
gtttagtgtccttattaattaat |
219 |
Q |
| |
|
||||||| ||||||||||||||| |
|
|
| T |
32224880 |
gtttagtatccttattaattaat |
32224858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 342 - 469
Target Start/End: Complemental strand, 32224721 - 32224594
Alignment:
| Q |
342 |
agcagccgtggtagcataatctcctacagtcttatgaacaccagctgcagcatttcccacagttttctgagcaccagcagcagcatttcctacagttttc |
441 |
Q |
| |
|
||||||| |||||||||| |||||||| ||||| |||||| |||||||||||||||||||||| |||| ||||||| ||||||||||| |||||| || |
|
|
| T |
32224721 |
agcagccttggtagcatattctcctacggtcttctgaacattagctgcagcatttcccacagttgtctggacaccagctgcagcatttcccacagttgtc |
32224622 |
T |
|
| Q |
442 |
tgtgctgaagctgctgcatcctttgcac |
469 |
Q |
| |
|
|||||||||||| ||||||||||||||| |
|
|
| T |
32224621 |
tgtgctgaagctactgcatcctttgcac |
32224594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 32220424 - 32220388
Alignment:
| Q |
114 |
ttagtatatcctatcctatagattatatgataagata |
150 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32220424 |
ttagtatatcctatcctatagattacatgataagata |
32220388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University