View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8233_low_8 (Length: 475)
Name: NF8233_low_8
Description: NF8233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8233_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 26429146 - 26428744
Alignment:
| Q |
1 |
taactgagagtgcctccatgattgaatggggtggtgaagttgtgaactctgagtctgatggacagcacacatcaacacaaatgggaagtggacattttcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26429146 |
taactgagagtgcctccatgattgaatggggtggtgaggttgtgaactctgagtctgatggacagcacacatcaacacaaatgggaagtggacattttcc |
26429047 |
T |
|
| Q |
101 |
tgatgaaggttttggcaaggctagttatttcaaaaatattcaggttgttgatggtgacaacaagttaagggctccaaaagatcttggtacttacactgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26429046 |
tgatgaaggttttggcaaggctagttatttcaaaaatattcaggttgttgatggtgacaacaagttaagggctccaaaagatcttggtacctacactgaa |
26428947 |
T |
|
| Q |
201 |
aaagataactgttataatgtcaaaactggtaatgctggtgattggggcacctacttctattatggtggtccgggtcgaaaccctaactgtccttgatctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26428946 |
aaagataactgttataatgtcaaaactggtaatgctggtgattggggcacctacttctattatggtggtccgggtcgaaaccctaactgtccttgatctt |
26428847 |
T |
|
| Q |
301 |
ttatgttaaagctgtggttttaaattgcaggtaaatgtggttgcaatatcgtggccgcagttgtggatcgcaatttaaaactacggttaaaagtttaagc |
400 |
Q |
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| T |
26428846 |
ttatgttaaagctgtggttttaaattgcaggtaaatgtggttgcaatatcgtggccgcagttgtggatcgcaatttaaaactacggttaaaagtttaagc |
26428747 |
T |
|
| Q |
401 |
act |
403 |
Q |
| |
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||| |
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| T |
26428746 |
act |
26428744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 460
Target Start/End: Complemental strand, 26428724 - 26428688
Alignment:
| Q |
424 |
ctagggtgttcttttgaattgatctagtgtagcttgt |
460 |
Q |
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| T |
26428724 |
ctagggtgttcttttgaattgatctagtgtagcttgt |
26428688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 36693456 - 36693592
Alignment:
| Q |
16 |
ccatgattgaatggggtggtgaagttgtgaactctgagtctgatggacagcacacatcaacacaaatgggaagtggacattttcctgatgaaggttttgg |
115 |
Q |
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||||||| |||||||| || |||||||| || || ||| ||||||| || ||||| ||||| || ||||||||||| ||||||||||| ||||| ||||| |
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| T |
36693456 |
ccatgatagaatggggaggagaagttgttaattccgagcctgatggtcaacacacttcaactcagatgggaagtggtcattttcctgaagaaggatttgg |
36693555 |
T |
|
| Q |
116 |
caaggctagttatttcaaaaatattcaggttgttgat |
152 |
Q |
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||| || |||||||| | |||||||| || |||||| |
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| T |
36693556 |
caaagcaagttattttaggaatattcaagtggttgat |
36693592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 29211197 - 29211149
Alignment:
| Q |
66 |
cacacatcaacacaaatgggaagtggacattttcctgatgaaggttttg |
114 |
Q |
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||||||||||| |||||||| |||||||||||| |||| || ||||||| |
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| T |
29211197 |
cacacatcaacccaaatgggtagtggacattttgctgaagagggttttg |
29211149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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